Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0377
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    30   1.7  
At5g58780.1 68418.m07362 dehydrodolichyl diphosphate synthase, p...    29   2.2  
At2g23400.1 68415.m02794 dehydrodolichyl diphosphate synthase, p...    28   5.2  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    28   5.2  
At2g26750.1 68415.m03208 epoxide hydrolase, putative strong simi...    27   9.0  
At1g62940.1 68414.m07107 4-coumarate--CoA ligase family protein ...    27   9.0  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 522 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGR 623
           D+D  E CS+ E ES ++E  L +++A N++ GR
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGR 466


>At5g58780.1 68418.m07362 dehydrodolichyl diphosphate synthase,
           putative / DEDOL-PP synthase, putative similar to
           GI:796076
          Length = 302

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 84  IIDRSNLCFQ---HSKQSFCFSHNCHGAEKARLLCLVFMLDH 200
           +I+ S LCF+   H+  +F FS    G  K  + CL+ ++ H
Sbjct: 103 LIEFSELCFKLGIHTVSAFAFSTENWGRHKIEVKCLMSLIQH 144


>At2g23400.1 68415.m02794 dehydrodolichyl diphosphate synthase,
           putative / DEDOL-PP synthase, putative similar to
           GI:796076; this may be a pseudogene.
          Length = 253

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 84  IIDRSNLCFQ---HSKQSFCFSHNCHGAEKARLLCLVFMLDH 200
           II+ + +CF+   H+  +F FS    G +K  + CL+ + +H
Sbjct: 69  IIEIAEVCFELGIHTVSAFAFSTENWGRDKFEVKCLMSLFNH 110


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = +3

Query: 507  IIKRIDRDRVECCSSLEQESTIKERGLQRQRAK 605
            +++ +  + VE C +LE  ST+K+R +++ + +
Sbjct: 1339 LLEGLTNELVEACKNLESRSTLKDREIEQLKGR 1371


>At2g26750.1 68415.m03208 epoxide hydrolase, putative strong
           similarity to ATsEH [Arabidopsis thaliana] GI:1109600
          Length = 320

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 366 CGPLRYYASWRKGDVLQGDXVG*RQGFPSHDVV 268
           CGP+ YY ++ + + L G  VG +   P+  V+
Sbjct: 228 CGPVNYYRNFNRNNELLGPWVGSKIQVPTKFVI 260


>At1g62940.1 68414.m07107 4-coumarate--CoA ligase family protein /
           4-coumaroyl-CoA synthase family protein similar to
           gi:112801 from Petroselinum crispum, GB:AAD40664 from
           [Solanum tuberosum] (J. Biol. Chem. 266 (13), 8551-8559
           (1991)); contains Pfam AMP-binding enzyme domain PF00501
          Length = 542

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 456 VKSAHFLTNRPKSAKSLIIKRIDRDRV 536
           V++ HF+ + PKS    I++R+ RD++
Sbjct: 510 VRAVHFVDSIPKSLSGKIMRRLLRDKI 536


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,127,642
Number of Sequences: 28952
Number of extensions: 302136
Number of successful extensions: 630
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)