Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0376
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Y8L4 Cluster: Putative uncharacterized protein; n=2; ...    41   0.034
UniRef50_UPI0000E4A7EB Cluster: PREDICTED: hypothetical protein;...    31   2.5  
UniRef50_Q8IAX7 Cluster: Putative uncharacterized protein MAL8P1...    34   2.9  
UniRef50_A4VEF0 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_Q8MMJ8 Cluster: Syntaxin-like protein; n=4; Endopterygo...    33   5.1  
UniRef50_Q5F9S9 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_UPI0000E4A971 Cluster: PREDICTED: similar to dsRNA aden...    33   8.9  

>UniRef50_Q4Y8L4 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 159

 Score = 40.7 bits (91), Expect = 0.034
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +3

Query: 201 KNVFYSCINLFYIYTQACYYVFIF*CDKLICIYFLFLTYLSNKNL 335
           K V++S  NLF++Y + CYY+  F C  +I I+  F+ +    NL
Sbjct: 22  KFVYFSFYNLFFLYFRFCYYLLKFVCSIIIAIFHFFVFFFFLHNL 66


>UniRef50_UPI0000E4A7EB Cluster: PREDICTED: hypothetical protein;
           n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 805

 Score = 31.1 bits (67), Expect(2) = 2.5
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 204 NVFYSCINLFYIYTQACYYVFIF*CDKLICIYFLFLTYL 320
           N FY CI  FYI    C+Y+  F C+    IYF    YL
Sbjct: 24  NCFY-CICFFYICFFNCFYLICF-CNYFYLIYFFNCFYL 60



 Score = 22.2 bits (45), Expect(2) = 2.5
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +3

Query: 417 F*NNFKVVCFFHVILMNIYYAILVLIFINYYIKLLCHFLVP 539
           F N F ++CFF+   +  +     LI+  +    L   + P
Sbjct: 54  FFNCFYLICFFNCFYLICFCNYFYLIYFFFNCSTLATVMAP 94


>UniRef50_Q8IAX7 Cluster: Putative uncharacterized protein
           MAL8P1.93; n=2; Plasmodium|Rep: Putative uncharacterized
           protein MAL8P1.93 - Plasmodium falciparum (isolate 3D7)
          Length = 234

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 156 NQQIKFE*FYLCS*VKNVFYSCINLFYIYTQACYYVFIF*CDKLICIYFLFL 311
           N  I F  FYL    KNVF + I++ YIY     Y++I+ C   I   F F+
Sbjct: 178 NDSINFLFFYLFYEHKNVFVN-IDIIYIYIYIYIYIYIYICIIYILDIFFFI 228


>UniRef50_A4VEF0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 463

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 24/87 (27%), Positives = 37/87 (42%)
 Frame = +3

Query: 255 YYVFIF*CDKLICIYFLFLTYLSNKNLDLNSIWIKLDHINCRNG*QP*RHSVKPF*NNFK 434
           Y+ FIF    +I +YF FL YL   N   + I  K  HI   +       + K F   F 
Sbjct: 354 YFFFIFSFQLIIQLYFFFLQYLKRSNQISDRIEQKYSHIQMHS---EYNLNQKLFIYLFI 410

Query: 435 VVCFFHVILMNIYYAILVLIFINYYIK 515
              + +  L  +YY +   I  ++ +K
Sbjct: 411 YYIYMYYCLFFLYYQVFKYIIFDFSMK 437


>UniRef50_Q8MMJ8 Cluster: Syntaxin-like protein; n=4;
           Endopterygota|Rep: Syntaxin-like protein - Bombyx mori
           (Silk moth)
          Length = 261

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +3

Query: 39  KSREXLHMNNDRRQWFA 89
           K  + LHMNNDRRQWFA
Sbjct: 227 KVAKLLHMNNDRRQWFA 243


>UniRef50_Q5F9S9 Cluster: Putative uncharacterized protein; n=1;
           Neisseria gonorrhoeae FA 1090|Rep: Putative
           uncharacterized protein - Neisseria gonorrhoeae (strain
           ATCC 700825 / FA 1090)
          Length = 135

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -1

Query: 351 KWNLNLNFY*TNKLKIRNKYILTCHIKK*THNSRPVCKYKI 229
           KW L L  Y T ++++RN +I     +  +HN+R +C+ +I
Sbjct: 52  KWGLWLKDYDTVEIELRNSFIKGMKCQNWSHNNRNICQVEI 92


>UniRef50_UPI0000E4A971 Cluster: PREDICTED: similar to dsRNA
           adenosine deaminase; n=11; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to dsRNA adenosine
           deaminase - Strongylocentrotus purpuratus
          Length = 1733

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 189 CS*VKNVFYSCINLFYIYTQACYYVFIF*CD-KLICIYFLFLTYLSNKNL 335
           C+ + N F   ++++Y   +A   + I  C   ++C+  + +TYLSNKNL
Sbjct: 278 CNHLSN-FAVLMDIYYERVEALRIISIIGCAISIVCLVIILITYLSNKNL 326


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,626,612
Number of Sequences: 1657284
Number of extensions: 11566192
Number of successful extensions: 22132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22102
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)