Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0376
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    25   7.9  

>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 222 INLFYIYTQACYYVFIF*CDKLICIYFLFLTYLS 323
           IN F +Y Q      +F    LI  +FLF ++LS
Sbjct: 155 INFFLLYHQIILSHSLFHISHLISFHFLFFSFLS 188


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 592 LCSVLIFLKSIIKIVSQL 645
           L  VL+F K ++K+VSQL
Sbjct: 172 LADVLVFRKKVLKLVSQL 189


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 423 NNFKVVCFFHVILMNIYYA-ILVLIFINYYIKLLCHFL 533
           NNF+V CF  ++L  I +   +V IF  Y I L   ++
Sbjct: 18  NNFQVSCFNPILLKIILFLNTIVCIFYVYKIALCNEYI 55


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 472 IMQFSYLSLSIIILNYCVTFWY 537
           ++Q  ++ LSI+ L  C+ +WY
Sbjct: 88  LLQTGFIVLSILYLPICLVWWY 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,200
Number of Sequences: 5004
Number of extensions: 54884
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)