Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0376
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56663| Best HMM Match : F420_oxidored (HMM E-Value=0)               29   3.6  
SB_5105| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-09)                  28   8.4  

>SB_56663| Best HMM Match : F420_oxidored (HMM E-Value=0)
          Length = 630

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +3

Query: 504 YYIKLLCHFLVPILGVLINTVVP*ILVCRPVFCSNI 611
           +Y +L+C+ L+ I+GV+ N +V  ++VCR     N+
Sbjct: 19  FYARLICYVLIFIIGVIGNILVC-LVVCRQRKMKNV 53


>SB_5105| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-09)
          Length = 438

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 166 LSLSNFIYVVK*KMYFILVLIYFI 237
           LSL +F  ++  K+YFIL+LIY +
Sbjct: 157 LSLGDFTPLIPWKIYFILMLIYLL 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,968,808
Number of Sequences: 59808
Number of extensions: 349014
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)