Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0376
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10200.1 68416.m01221 dehydration-responsive protein-related ...    30   1.3  
At1g80310.1 68414.m09402 expressed protein                             30   1.7  
At5g04060.1 68418.m00387 dehydration-responsive protein-related ...    29   3.0  
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik...    28   6.8  
At2g43740.1 68415.m05437 hypothetical protein weak similarity to...    27   9.0  

>At3g10200.1 68416.m01221 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 591

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 449 PCNFNEYLLCNSRTYLYQLL 508
           P  FNEY+ C++ TY++QLL
Sbjct: 76  PLEFNEYIPCHNVTYVHQLL 95


>At1g80310.1 68414.m09402 expressed protein
          Length = 464

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 453 VILMNIYYAILVLIFINYYIKLLCHFLVPILGVLI 557
           VI + I   I+ L+F N ++++L  F + ILGVL+
Sbjct: 349 VIFLGIGKLIVGLVFGNSFVRILSQFPIGILGVLL 383


>At5g04060.1 68418.m00387 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 600

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 449 PCNFNEYLLCNSRTYLYQLL 508
           P  FNEY+ C++ TY+ QLL
Sbjct: 87  PLKFNEYIPCHNVTYVQQLL 106


>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
           ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
          Length = 1450

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +3

Query: 207 VFYSCINLFYIYTQACYYVFIF*CDKLICIYFLFLTYLSNKNLDLNSI 350
           +F +CI+  Y+  +  Y+V+IF   +L+   F+ +T      + ++ I
Sbjct: 526 LFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDII 573


>At2g43740.1 68415.m05437 hypothetical protein weak similarity to
           RTM1 (GI:6503088) [Arabidopsis thaliana]
          Length = 309

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 530 FGTYFRSFNQYGCSINIGLQTC 595
           FG +F SF+ YG   +IG+  C
Sbjct: 168 FGGFFGSFDNYGTLTSIGIYVC 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,232,013
Number of Sequences: 28952
Number of extensions: 249101
Number of successful extensions: 336
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)