Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0375
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3A1G5 Cluster: Putative uncharacterized protein; n=2; ...    36   1.3  
UniRef50_Q4FNP2 Cluster: Virulence factor MVIN-like; n=2; Candid...    35   1.7  
UniRef50_A6SUS0 Cluster: Transporter of the DMT superfamily; n=1...    33   8.9  

>UniRef50_Q3A1G5 Cluster: Putative uncharacterized protein; n=2;
           Proteobacteria|Rep: Putative uncharacterized protein -
           Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
          Length = 346

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = +1

Query: 547 KSRFFLTILMKLLNIYFIDLVFPIIMGVIIWPELSIYPW 663
           ++R+   +  +LL++Y + L+ P++  +  WP+L +YPW
Sbjct: 61  RARWIAALRQELLSLYPLLLLLPLLF-LFFWPQLDLYPW 98


>UniRef50_Q4FNP2 Cluster: Virulence factor MVIN-like; n=2;
           Candidatus Pelagibacter ubique|Rep: Virulence factor
           MVIN-like - Pelagibacter ubique
          Length = 508

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +1

Query: 502 LIISIKLFYFFDINSKSRFFLTILMKLLNIYFIDLVFPIIMGVIIWP-ELSIYPWYKFVL 678
           LI     F+F   N+K  F++++L  LLNI FI ++F   +G II P   +   W+  +L
Sbjct: 363 LIKVFSTFFFARHNTKIPFYISLLSVLLNI-FISVIFFKQIGFIIIPIATTTSSWFNALL 421

Query: 679 MF 684
           +F
Sbjct: 422 LF 423


>UniRef50_A6SUS0 Cluster: Transporter of the DMT superfamily; n=1;
           Janthinobacterium sp. Marseille|Rep: Transporter of the
           DMT superfamily - Janthinobacterium sp. (strain
           Marseille) (Minibacterium massiliensis)
          Length = 304

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +1

Query: 463 LMKSVSTYS*QQYLIISIKLFYFFDINSKSRFF-LTILMKLLNIYFIDLVFPIIMGVIIW 639
           L++S STY    +L++SI +F      + +R + L   +   N+ +  +VF  I GV+IW
Sbjct: 201 LLRSHSTYG--MFLLLSIGVFAAIAQMAMTRAYRLGNTLVTANLQYTGIVFSSIWGVLIW 258

Query: 640 PE-LSIYPW 663
            + L  + W
Sbjct: 259 SDILGFFSW 267


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,628,043
Number of Sequences: 1657284
Number of extensions: 10011846
Number of successful extensions: 17178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17168
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)