Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0375
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    26   4.5  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   7.9  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    25   7.9  

>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 592 YFIDLVFPIIMGVIIWPELSIYPWY 666
           +FI +V  ++   I+WP LS++ W+
Sbjct: 200 FFIFVVVYLLFKRIVWPILSMFLWF 224


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 499 YLIISIKLFYFFDINSKSRFFLTILMKLLNIYFIDLVFPII 621
           YL +SI LFY F     + F L +    ++  ++  V P++
Sbjct: 172 YLFLSIHLFYVFQSFPWTYFCLAVSGTCISELYVLFVHPVV 212


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/15 (60%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = +1

Query: 634 IWPELSIYP-WYKFV 675
           +WPELS +P W KF+
Sbjct: 238 MWPELSTFPDWNKFI 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,304
Number of Sequences: 5004
Number of extensions: 47393
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)