Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0375
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-16|CAA85338.2|  538|Caenorhabditis elegans Hypothetical p...    28   5.6  
AF187012-1|AAG35182.1|  538|Caenorhabditis elegans nicotinic ace...    28   5.6  
Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z36753-16|CAA85338.2|  538|Caenorhabditis elegans Hypothetical
           protein T09A5.3 protein.
          Length = 538

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 405 NMKYKQLINQYFLMIF*FLFNEICEYLFLTTIPDNFYK 518
           N++Y+Q+ N Y   +F  +F E   +L +   PD+ ++
Sbjct: 334 NIRYRQITNHYLSPMFRSIFLECLPWLMMMKRPDHKFR 371


>AF187012-1|AAG35182.1|  538|Caenorhabditis elegans nicotinic
           acetylcholine receptor-like subunit ACR-7 protein.
          Length = 538

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 405 NMKYKQLINQYFLMIF*FLFNEICEYLFLTTIPDNFYK 518
           N++Y+Q+ N Y   +F  +F E   +L +   PD+ ++
Sbjct: 334 NIRYRQITNHYLSPMFRSIFLECLPWLMMMKRPDHKFR 371


>Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical
           protein T03F7.2 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = +1

Query: 460 YLMKSVSTYS*QQYLIISIKLFYFFDINSKSRFFLTILMKLLNIYFIDLVFPIIMGVIIW 639
           YL+K   TYS         +   F +I+S + FFLT  +  L IY I    P  M  I W
Sbjct: 17  YLLKCTRTYS-------FFETEQFLEISSYALFFLTTPINFLGIYCIIFKTPNEMLPIKW 69

Query: 640 PELSIY 657
             L ++
Sbjct: 70  CMLYLH 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,742
Number of Sequences: 27780
Number of extensions: 255095
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)