Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0374
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   149   3e-37
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   149   3e-37
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    31   0.21 
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.64 
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    28   1.1  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.4  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   4.5  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   7.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.8  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   7.8  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  149 bits (362), Expect = 3e-37
 Identities = 67/84 (79%), Positives = 74/84 (88%)
 Frame = +1

Query: 10  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 189
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 190 SSEALEAGRICCNKYLVKNCGKIS 261
           +SEALEA RIC NKYLVK  GK S
Sbjct: 61  TSEALEAARICANKYLVKIGGKDS 84



 Score =  138 bits (334), Expect = 7e-34
 Identities = 65/94 (69%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
 Frame = +3

Query: 252 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 431
           KD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ 
Sbjct: 82  KDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTK 141

Query: 432 DRWKAQVIEALRRAKFKFPGRQKIYVQRS-GVSQ 530
           D  +A  IEALRR ++KFPG+Q+I V +  G SQ
Sbjct: 142 DSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175



 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +2

Query: 470 CQVQVPRTSKDLRSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 619
           CQ + P   + + SKKWGF++Y RDE+ + R  G +  DGC  ++  + G
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRG 204


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  149 bits (362), Expect = 3e-37
 Identities = 67/84 (79%), Positives = 74/84 (88%)
 Frame = +1

Query: 10  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 189
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 190 SSEALEAGRICCNKYLVKNCGKIS 261
           +SEALEA RIC NKYLVK  GK S
Sbjct: 61  TSEALEAARICANKYLVKIGGKDS 84



 Score =  138 bits (333), Expect = 9e-34
 Identities = 65/94 (69%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
 Frame = +3

Query: 252 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 431
           KD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ 
Sbjct: 82  KDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTK 141

Query: 432 DRWKAQVIEALRRAKFKFPGRQKIYVQRS-GVSQ 530
           D  +A  IEALRR ++KFPG+Q+I V +  G SQ
Sbjct: 142 DSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175



 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +2

Query: 470 CQVQVPRTSKDLRSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 619
           CQ + P   + + SKKWGF++Y RDE+ + R  G +  DGC  ++  + G
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRG 204


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
 Frame = +3

Query: 240 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQ 407
           K+L   +  ++  L P    R+     C        G     GK +G      AR+ IG+
Sbjct: 87  KQLETAEQILKRILKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGR 145

Query: 408 PIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVQRS 518
            +  +      K     AL++A F  PG+ +I V+++
Sbjct: 146 VLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIVKQT 182


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 34  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 210
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 211 G 213
           G
Sbjct: 94  G 94


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 29/86 (33%), Positives = 41/86 (47%)
 Frame = +2

Query: 47  KINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCPTNMNS*AQRLWRQDVSAA 226
           KI R+R+  SV + L   S+S  W  R   L   H   T   +  +  A RL  + VS  
Sbjct: 340 KIKRLRSEPSVSLTL---SIS--WYERFEKL--MHAQNTMLRSAFSHVA-RLPMETVSQL 391

Query: 227 ISTS*RTAERSVPYPHETSPFPRYPH 304
           +S    T  + +P P ETSP P+ P+
Sbjct: 392 LSHYTETISQYLP-PSETSPIPKTPN 416


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 91  DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 210
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +1

Query: 112  DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGKI 258
            ++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN  K+
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQKL 1086


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 125 RERPLTTFHCACTWCPTNMNS 187
           R RP +T H +CT+C   + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 383  STLRLAKRTTHPSLEPISSS 324
            +T +LAKR T PSL P  S+
Sbjct: 957  TTTKLAKRITQPSLSPARST 976


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 210  CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 94
            CL  L   L   + H++ ++W+ +N R LL + +  + G
Sbjct: 940  CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 252 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 356
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 77  VGVYLIPRSVSSIWV 121
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,441
Number of Sequences: 5004
Number of extensions: 65583
Number of successful extensions: 218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)