Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0374
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 140 6e-34
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 140 6e-34
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 140 8e-34
At4g37000.1 68417.m05242 accelerated cell death 2 (ACD2) identic... 29 2.2
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ... 29 2.9
At5g47870.1 68418.m05914 expressed protein 29 3.9
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 5.1
At5g10240.1 68418.m01189 asparagine synthetase 3 (ASN3) identica... 28 6.8
At4g24120.1 68417.m03462 transporter, putative similar to iron-p... 28 6.8
At3g47340.3 68416.m05147 asparagine synthetase 1 [glutamine-hydr... 28 6.8
At3g47340.2 68416.m05146 asparagine synthetase 1 [glutamine-hydr... 28 6.8
At3g47340.1 68416.m05145 asparagine synthetase 1 [glutamine-hydr... 28 6.8
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 27 9.0
At1g07490.1 68414.m00802 expressed protein 27 9.0
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 140 bits (340), Expect = 6e-34
Identities = 62/82 (75%), Positives = 69/82 (84%)
Frame = +1
Query: 10 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 189
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 190 SSEALEAGRICCNKYLVKNCGK 255
SSEALEA RI CNKY+VK+ GK
Sbjct: 61 SSEALEAARIACNKYMVKSAGK 82
Score = 138 bits (335), Expect = 2e-33
Identities = 66/92 (71%), Positives = 72/92 (78%)
Frame = +3
Query: 240 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 419
K KD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 420 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVQR 515
VR D EALRRAKFKFPGRQKI V R
Sbjct: 138 VRCKDNHGVHAQEALRRAKFKFPGRQKIIVSR 169
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +2
Query: 485 PRTSKDLRSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPSRRLEEGS 646
P K + S+KWGFTK+ R E+ KLR R+ DG ++ HGP + GS
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGS 213
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 140 bits (340), Expect = 6e-34
Identities = 62/82 (75%), Positives = 69/82 (84%)
Frame = +1
Query: 10 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 189
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 190 SSEALEAGRICCNKYLVKNCGK 255
SSEALEA RI CNKY+VK+ GK
Sbjct: 61 SSEALEAARIACNKYMVKSAGK 82
Score = 137 bits (332), Expect = 6e-33
Identities = 66/92 (71%), Positives = 72/92 (78%)
Frame = +3
Query: 240 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 419
K KD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 420 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVQR 515
VR D EALRRAKFKFPGRQKI V R
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSR 169
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +2
Query: 485 PRTSKDLRSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPSRRLEEGS 646
P K + S+KWGFTK+ R +F KLR+E R+ DG ++ HGP + GS
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGS 213
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 140 bits (339), Expect = 8e-34
Identities = 62/82 (75%), Positives = 69/82 (84%)
Frame = +1
Query: 10 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 189
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 190 SSEALEAGRICCNKYLVKNCGK 255
SSEALEA RI CNKY+VK+ GK
Sbjct: 61 SSEALEAARIACNKYMVKSAGK 82
Score = 137 bits (332), Expect = 6e-33
Identities = 66/92 (71%), Positives = 72/92 (78%)
Frame = +3
Query: 240 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 419
K KD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 420 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVQR 515
VR D EALRRAKFKFPGRQKI V R
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSR 169
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +2
Query: 485 PRTSKDLRSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPSRRLEEGS 646
P K + S+KWGFTK+ R ++ KLR+E R+ DG ++ HGP + GS
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGS 213
>At4g37000.1 68417.m05242 accelerated cell death 2 (ACD2) identical
to accelerated cell death 2 (ACD2) GI:12484129 from
[Arabidopsis thaliana]
Length = 319
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 671 RLYIEDLSLNLPPSVEKXHVPGGTXQCSRH*RGG 570
RL + L NLPP V + P G+ + S H R G
Sbjct: 76 RLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSG 109
>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
WD-40 repeats (PF0400);similar to guanine
nucleotide-binding protein beta subunit GPBA (SP:P36408)
[Dictyostelium discoideum (Slime mold)]; similar to
katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
[Homo sapiens]
Length = 418
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 479 QVPRTSKDLRSKKWGFTKYERDEFEKLR 562
Q R KD++ +W KY RDEF + R
Sbjct: 26 QEARNGKDIQGIQWEGFKYNRDEFRETR 53
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +3
Query: 270 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 449
R++L PF + +N+ + C+G G+ G + V PI SS
Sbjct: 23 RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77
Query: 450 VIEALRRAKFKFP 488
+IE LR K P
Sbjct: 78 LIEILRDLNKKIP 90
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 169 SDEYEQLSSEALEAGRICCNKYLV 240
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g10240.1 68418.m01189 asparagine synthetase 3 (ASN3) identical
to asparagine synthetase (ASN3) [Arabidopsis thaliana]
GI:3859534
Length = 578
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 153 VRALGVRRI*TAELRG--FGGRTYLLQ*VPRKELRKDQFHIRMRLHPFHVIRINKMLSCA 326
+++LGV+ + + E FGG Y + +KE ++ LH + +R NK S
Sbjct: 331 IKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKKEFHEETCRKIKALHQYDCLRANKSTSAW 390
Query: 327 GAD 335
G +
Sbjct: 391 GVE 393
>At4g24120.1 68417.m03462 transporter, putative similar to
iron-phytosiderophore transporter protein yellow stripe
1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
OPT oligopeptide transporter protein
Length = 665
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 235 LVKNCGKISSISA*DF-TLSTLSASIKCYHALELIGSRLGCVVRLASLRVL*HVFALDSP 411
L+K+ +S I DF T S K A ++IG+ +GC+V S + F + +P
Sbjct: 468 LIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNP 527
Query: 412 S 414
+
Sbjct: 528 N 528
>At3g47340.3 68416.m05147 asparagine synthetase 1
[glutamine-hydrolyzing] / glutamine-dependent asparagine
synthetase 1 (ASN1) identical to SP|P49078 Asparagine
synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
(Glutamine- dependent asparagine synthetase)
{Arabidopsis thaliana}
Length = 456
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 153 VRALGVRRI*TAELRG--FGGRTYLLQ*VPRKELRKDQFHIRMRLHPFHVIRINKMLSCA 326
+++LGV+ + + E FGG Y + +KE ++ LH + +R NK S
Sbjct: 331 IKSLGVKMVLSGEGADEIFGGYLYFHKAPNKKEFHQETCRKIKALHKYDCLRANKSTSAF 390
Query: 327 GAD 335
G +
Sbjct: 391 GLE 393
>At3g47340.2 68416.m05146 asparagine synthetase 1
[glutamine-hydrolyzing] / glutamine-dependent asparagine
synthetase 1 (ASN1) identical to SP|P49078 Asparagine
synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
(Glutamine- dependent asparagine synthetase)
{Arabidopsis thaliana}
Length = 512
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 153 VRALGVRRI*TAELRG--FGGRTYLLQ*VPRKELRKDQFHIRMRLHPFHVIRINKMLSCA 326
+++LGV+ + + E FGG Y + +KE ++ LH + +R NK S
Sbjct: 331 IKSLGVKMVLSGEGADEIFGGYLYFHKAPNKKEFHQETCRKIKALHKYDCLRANKSTSAF 390
Query: 327 GAD 335
G +
Sbjct: 391 GLE 393
>At3g47340.1 68416.m05145 asparagine synthetase 1
[glutamine-hydrolyzing] / glutamine-dependent asparagine
synthetase 1 (ASN1) identical to SP|P49078 Asparagine
synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
(Glutamine- dependent asparagine synthetase)
{Arabidopsis thaliana}
Length = 584
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 153 VRALGVRRI*TAELRG--FGGRTYLLQ*VPRKELRKDQFHIRMRLHPFHVIRINKMLSCA 326
+++LGV+ + + E FGG Y + +KE ++ LH + +R NK S
Sbjct: 331 IKSLGVKMVLSGEGADEIFGGYLYFHKAPNKKEFHQETCRKIKALHKYDCLRANKSTSAF 390
Query: 327 GAD 335
G +
Sbjct: 391 GLE 393
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 118 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 11
PN R+G S+D +PD + D VY G +L P
Sbjct: 53 PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89
>At1g07490.1 68414.m00802 expressed protein
Length = 107
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 451 SSRLCAVPSSSSPDVKRSTFKE 516
SS C+VPSSSS + RS+ K+
Sbjct: 48 SSTKCSVPSSSSSSISRSSSKK 69
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,455,138
Number of Sequences: 28952
Number of extensions: 367173
Number of successful extensions: 1091
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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