Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0373
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.5  

>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 554 ALRSVSNLFIILIC*SDYLI 613
           +LR+ SNLF+I +  SD+L+
Sbjct: 48  SLRTPSNLFVINLAISDFLM 67


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 315 HHVPDLVRGRIDYGTPHRAFGKIFY 389
           H  P+L+ G  D      AFG +F+
Sbjct: 760 HMAPELLSGHYDSSVDVYAFGILFW 784


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 315 HHVPDLVRGRIDYGTPHRAFGKIFY 389
           H  P+L+ G  D      AFG +F+
Sbjct: 798 HMAPELLSGHYDSSVDVYAFGILFW 822


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 554 ALRSVSNLFIILIC*SDYLI 613
           +LR+ SNLF+I +  S++L+
Sbjct: 82  SLRTPSNLFVINLAISNFLM 101


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 557 LRSVSNLFIILIC*SDYLIFL 619
           LR    LFI ++C   YLI L
Sbjct: 411 LRKRKELFIAIVCFVSYLIGL 431


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 557 LRSVSNLFIILIC*SDYLIFL 619
           LR    LFI ++C   YLI L
Sbjct: 464 LRKRKELFIAIVCFVSYLIGL 484


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 344 DRLRNATSRLRKNLLLV 394
           DRL+      RKN+LLV
Sbjct: 51  DRLQRVVDWFRKNMLLV 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,857
Number of Sequences: 438
Number of extensions: 3245
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)