Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0372
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    27   3.4  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   4.5  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    26   6.0  

>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 563 VYSCLKSTC*SRRDGFLRF--EYFSQTFHIL 477
           ++ CL S   + RDGF  F  E +++TF IL
Sbjct: 607 LFECLSSVAVALRDGFAPFAAETYARTFRIL 637


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 340 SLTELAPGGRVCSEPALSQGYKYIVETLRTQI 435
           S+ E+   G    E A+ +GY ++ + LRTQ+
Sbjct: 426 SVDEVDSSGWTAMEQAVVRGYLHLADKLRTQV 457


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 373 TLCHQGPVLLMRTVQFFRLVNCADRQNVDFHIFIS*LRFS 254
           +LC++ P  L++  Q+F+L     R   DF+I+   L F+
Sbjct: 121 SLCNEKPPNLVQACQYFQLSAGCFRYINDFYIYTKSLDFN 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,550
Number of Sequences: 5004
Number of extensions: 38912
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)