Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0372
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1066 - 27323493-27323936                                         28   8.2  
01_06_1468 + 37574124-37574180,37574275-37574346,37574437-375745...    28   8.2  

>06_03_1066 - 27323493-27323936
          Length = 147

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 269 LTEILTRS*DIATNTYGASNDRVDNEFPSARV 174
           LTE  +   DI  N Y A+    +N+FPS R+
Sbjct: 8   LTEATSAIHDITVNGYSATKSGGENDFPSRRL 39


>01_06_1468 +
           37574124-37574180,37574275-37574346,37574437-37574513,
           37574897-37574978,37576005-37576069,37576313-37576354,
           37576452-37576503,37576631-37576679,37576784-37576797,
           37576942-37577049,37577129-37577272,37577421-37577810
          Length = 383

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 371 TLPPGASSVNENCAIL 324
           TLPPG S +N+ C +L
Sbjct: 184 TLPPGVSGINDRCTLL 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,810,621
Number of Sequences: 37544
Number of extensions: 229360
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)