Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0372
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-1|CAA20945.1|  550|Caenorhabditis elegans Hypothetical ...    30   1.4  
U58740-2|AAD32276.1|  191|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical p...    29   4.2  
AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear recep...    29   4.2  

>AL031627-1|CAA20945.1|  550|Caenorhabditis elegans Hypothetical
           protein Y102A5C.4 protein.
          Length = 550

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 530 RRDGFLRFEYFSQTFHILIISKQMTVMVFLLYIWVLKVSTIY 405
           R  GF R + +SQ    L+I+ Q T++   LY W+ + + +Y
Sbjct: 441 RSVGFQRQKTYSQQLRTLLITHQPTLVNMPLYSWIFQNNYLY 482


>U58740-2|AAD32276.1|  191|Caenorhabditis elegans Hypothetical
           protein R09H3.3 protein.
          Length = 191

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 233 TNTYGASNDRVDNEFPSARVISHQSL 156
           TN  G +N+ ++N F S   ++HQSL
Sbjct: 149 TNAIGITNEDIENSFASGDQLAHQSL 174


>Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 365 PPGASSVNENCAILSTC*LCGQTKCRLSYLY 273
           PP    VNE  AI + C +CG   C  S+LY
Sbjct: 19  PPSPPLVNEKAAIGALCVVCGDRAC--SHLY 47


>AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 365 PPGASSVNENCAILSTC*LCGQTKCRLSYLY 273
           PP    VNE  AI + C +CG   C  S+LY
Sbjct: 19  PPSPPLVNEKAAIGALCVVCGDRAC--SHLY 47


>AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear receptor
           NHR-97 protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 365 PPGASSVNENCAILSTC*LCGQTKCRLSYLY 273
           PP    VNE  AI + C +CG   C  S+LY
Sbjct: 19  PPSPPLVNEKAAIGALCVVCGDRAC--SHLY 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,322,461
Number of Sequences: 27780
Number of extensions: 224174
Number of successful extensions: 491
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)