Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0372
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              24   1.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.5  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 349 LLMRTVQFFR-LVNCADRQNVDFH 281
           L  R+V  F+ + +C DR N+ FH
Sbjct: 20  LRARSVNIFQDIADCVDRSNMTFH 43


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 262 RFSHVHETLQLILTGRATIALITSS 188
           +F +VH+TLQ+    + T++ +TS+
Sbjct: 462 QFPYVHDTLQIQPQEQLTLSKVTSN 486


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 347 QNWPLVAECAASLHSVRDISI 409
           Q+WP+  E AAS  S  D+++
Sbjct: 462 QHWPMEEEPAASWGSASDVTL 482


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 362 VAECAASLHSVRDISILLRL*E 427
           +AEC  S ++V+  +++LRL E
Sbjct: 75  IAECPESENTVQKAALVLRLRE 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,565
Number of Sequences: 438
Number of extensions: 2525
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)