Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0371
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8EWI5 Cluster: ABC transporter ATP-binding protein; n=...    35   2.2  
UniRef50_Q8TBC4 Cluster: NEDD8-activating enzyme E1 catalytic su...    33   8.9  

>UniRef50_Q8EWI5 Cluster: ABC transporter ATP-binding protein; n=1;
           Mycoplasma penetrans|Rep: ABC transporter ATP-binding
           protein - Mycoplasma penetrans
          Length = 547

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 34  YLSI*FRSNLIISYYLFINWQCFANVFCLFSFNILIYKTKDRFHDIIRDPFN 189
           + ++ F S+LII  +  +NW     +  L S N+L+ K    + + I   FN
Sbjct: 136 FFNLGFLSSLIIVIFFVLNWILALTILILISINLLVVKLSQNYSEKISKKFN 187


>UniRef50_Q8TBC4 Cluster: NEDD8-activating enzyme E1 catalytic
           subunit; n=167; root|Rep: NEDD8-activating enzyme E1
           catalytic subunit - Homo sapiens (Human)
          Length = 463

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 542 DRKNNCNILPMFKKKKKTNHTFYR 613
           DR  NCN++P F K +  N TFYR
Sbjct: 134 DRVPNCNVVPHFNKIQDFNDTFYR 157


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,773,550
Number of Sequences: 1657284
Number of extensions: 12256515
Number of successful extensions: 23618
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23592
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)