Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0371
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    26   0.34 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    26   0.34 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    26   0.34 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    26   0.34 
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   9.7  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   9.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 680 YNLYLFC-IWQWNRISICVIFFLVYKRCDLFFFF 582
           Y +Y+F  +W+     + V+F L+ K  ++ FFF
Sbjct: 296 YFIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 680 YNLYLFC-IWQWNRISICVIFFLVYKRCDLFFFF 582
           Y +Y+F  +W+     + V+F L+ K  ++ FFF
Sbjct: 296 YFIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 680 YNLYLFC-IWQWNRISICVIFFLVYKRCDLFFFF 582
           Y +Y+F  +W+     + V+F L+ K  ++ FFF
Sbjct: 296 YFIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 680 YNLYLFC-IWQWNRISICVIFFLVYKRCDLFFFF 582
           Y +Y+F  +W+     + V+F L+ K  ++ FFF
Sbjct: 296 YFIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -2

Query: 671 YLFCIWQW 648
           Y+ CIW W
Sbjct: 292 YVMCIWYW 299


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -2

Query: 671 YLFCIWQW 648
           Y+ CIW W
Sbjct: 292 YVMCIWYW 299


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,684
Number of Sequences: 336
Number of extensions: 3921
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)