Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0371
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   3.4  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   4.5  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   6.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   7.9  

>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 230  SQLEICKYYLWCTQLKGSRIIS*NLSLVL--YIKILKLNKQ 114
            SQL + K Y W  +++G  II  N + V+  ++ IL + +Q
Sbjct: 891  SQLALAKLYSWTNRIEGENIILSNETEVIENHLAILLIQEQ 931


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 355 SLNYAL*IIKENESVLCCFLT 417
           S NY L I  +NE+  CC+LT
Sbjct: 277 SHNYPLSIANDNETPNCCYLT 297


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +2

Query: 113  FVYSVLIF*YTRLRTDFMILFVILSIVCTIDNIYIFLIDCAYHAFRI---EWLNPKFLFF 283
            F Y  LIF       +F ++F+ +  +  I  I + L   A+  F I   E    K L+ 
Sbjct: 1416 FAYGQLIFTAAIFIMNFKLVFIEMQYINIISIIVLVLTSLAWFLFNIFISEHYPDKNLYL 1475

Query: 284  GRSQ 295
             RSQ
Sbjct: 1476 ARSQ 1479


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 549 KTIATFYQCLKKKKKQITPFID*KENYANRNTIP 650
           + + T Y  LKK+   I+P I  K +Y    TIP
Sbjct: 315 RVLTTDYNNLKKQWASISPNITYKHSYNPNGTIP 348


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 89  IGSVLPMYFVYSVLIF*YTRLRTDFMILFVILSIVCT-IDNIYIF 220
           + S   MY V S++ F    + T F + ++ LSI+ T + N+Y F
Sbjct: 669 LSSTYGMYLVVSIISFDPWHMFTSF-VQYIFLSIMYTNVLNVYAF 712


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,425
Number of Sequences: 5004
Number of extensions: 59423
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)