Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0371
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13)                   30   2.1  
SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)                 30   2.1  
SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)            29   4.8  

>SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13)
          Length = 557

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 179 ILSIVCTIDNIYIFLIDCAYHAFRIEWLNPKFLFFGR 289
           +L+ V T   I + L+   +  +R++W +  F +FGR
Sbjct: 452 LLTFVLTGVGIVLLLVVVCFVVYRVKWFSTSFTYFGR 488


>SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)
          Length = 467

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 510 KLRYEAPIHRKTVKTIATFYQCLK 581
           KL  E P H +T++ + TF QCLK
Sbjct: 434 KLWNELPFHLRTIQNLNTFKQCLK 457


>SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)
          Length = 444

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = +1

Query: 304 LKNCNSSIGAYLKIIIQSLNYAL*IIKENESVLCCFLTKI*LNR*ITL*VSQSNKTHFL* 483
           +  CN+  GA    +++ L  A+ +I  + SVL C+L+++   R  T   +Q  KT F  
Sbjct: 66  VNECNTLDGAIGVCVLEVLEVAIAVILISGSVLLCYLSRVAAGR--TYSTAQMVKT-FRD 122

Query: 484 TFYIS 498
           TF I+
Sbjct: 123 TFVIT 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,259,755
Number of Sequences: 59808
Number of extensions: 369939
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)