Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0371
         (699 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022853-1|AAH22853.1|  463|Homo sapiens ubiquitin-activating en...    33   1.3  
AF046024-1|AAC27648.1|  442|Homo sapiens UBA3 protein.                 33   1.3  
AB012190-1|BAA33144.1|  442|Homo sapiens Nedd8-activating enzyme...    33   1.3  
CR533537-1|CAG38568.1|  463|Homo sapiens UBE1C protein.                32   2.3  

>BC022853-1|AAH22853.1|  463|Homo sapiens ubiquitin-activating
           enzyme E1C (UBA3 homolog, yeast) protein.
          Length = 463

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 542 DRKNNCNILPMFKKKKKTNHTFYR 613
           DR  NCN++P F K +  N TFYR
Sbjct: 134 DRVPNCNVVPHFNKIQDFNDTFYR 157


>AF046024-1|AAC27648.1|  442|Homo sapiens UBA3 protein.
          Length = 442

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 542 DRKNNCNILPMFKKKKKTNHTFYR 613
           DR  NCN++P F K +  N TFYR
Sbjct: 113 DRVPNCNVVPHFNKIQDFNDTFYR 136


>AB012190-1|BAA33144.1|  442|Homo sapiens Nedd8-activating enzyme
           hUba3 protein.
          Length = 442

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 542 DRKNNCNILPMFKKKKKTNHTFYR 613
           DR  NCN++P F K +  N TFYR
Sbjct: 113 DRVPNCNVVPHFNKIQDFNDTFYR 136


>CR533537-1|CAG38568.1|  463|Homo sapiens UBE1C protein.
          Length = 463

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 542 DRKNNCNILPMFKKKKKTNHTFYR 613
           DR  NCN++P F K +  N TFYR
Sbjct: 134 DRVPNCNVVPHFYKIQDFNDTFYR 157


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,546,168
Number of Sequences: 237096
Number of extensions: 1805410
Number of successful extensions: 6034
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6034
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)