Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0371
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-5|AAB09179.2|  294|Caenorhabditis elegans Serpentine rece...    29   3.2  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine re...    27   9.8  
AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm rece...    27   9.8  

>U70858-5|AAB09179.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein34 protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 152 RTDFMILFVILSIVCTIDNIYIFLIDCAYHAFRIEW 259
           RT  +I+F ++++   I N ++F+IDC +      W
Sbjct: 118 RTTRVIIFSVITLSLLIVNCWLFIIDCRFSFDEDHW 153


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 679 IIYTYFVYGNGIVFLF 632
           +I+TYF YGN I  LF
Sbjct: 73  LIFTYFCYGNAIAHLF 88


>AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein87 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 161 FMILFVILSIVCTIDNIYIFLIDCAYHAF 247
           F+I F +L +V  +  I  +L  C Y+ F
Sbjct: 211 FLIAFTVLGVVVEVIQILFYLTCCVYYLF 239


>AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 31 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 101 LPMYFVYSVLIF*YTRLRTDFMILFVILSIVCTIDNIYIFLIDCAYHAF 247
           L + F++ + IF   R+ T +  L ++ SI+C I +    L+   +H+F
Sbjct: 24  LNLTFIF-LTIFHTKRIDTTYKELLIVFSILCLIFSFIEMLVHPFFHSF 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,974
Number of Sequences: 27780
Number of extensions: 320644
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)