Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0370
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   113   3e-26

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  113 bits (271), Expect = 3e-26
 Identities = 52/91 (57%), Positives = 73/91 (80%), Gaps = 1/91 (1%)
 Frame = +3

Query: 240 VIRIYV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN-PNIL* 416
           ++ + V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L 
Sbjct: 288 LLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLY 347

Query: 417 RLGFVFLFTVGGLTGVILANSSIDITLHDTY 509
            +GF+ LFT+GGLTGVIL+NS +DI  HDTY
Sbjct: 348 AIGFLILFTIGGLTGVILSNSVLDIAFHDTY 378



 Score = 95.5 bits (227), Expect = 7e-21
 Identities = 39/51 (76%), Positives = 46/51 (90%)
 Frame = +1

Query: 19  ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 171
           +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII
Sbjct: 215 MLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII 265



 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 31/61 (50%), Positives = 34/61 (55%)
 Frame = +2

Query: 512 VVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLG 691
           VVAHFHYVLS               P   GL  N  +  IQF+ +FIGVNI F PQHFLG
Sbjct: 380 VVAHFHYVLSMGALFGLCGAYYW-SPKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLG 438

Query: 692 L 694
           L
Sbjct: 439 L 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,432
Number of Sequences: 5004
Number of extensions: 37368
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)