Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0370
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 108 4e-24
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012) 29 3.6
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21) 29 3.6
SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22) 29 4.8
SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018) 28 8.4
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 108 bits (260), Expect = 4e-24
Identities = 49/75 (65%), Positives = 64/75 (85%)
Frame = +3
Query: 285 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 464
+++DTRAYFT+AT+IIAVPTGIK+F LAT++G I + +L +GFVFLFT+GGLTGV
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60
Query: 465 ILANSSIDITLHDTY 509
ILANSS+D+ +HDTY
Sbjct: 61 ILANSSLDVVMHDTY 75
Score = 63.7 bits (148), Expect = 1e-10
Identities = 33/62 (53%), Positives = 36/62 (58%)
Frame = +2
Query: 512 VVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLG 691
VVAHFHYVLS + TG N KI F+ +FIGVNITFFPQHFLG
Sbjct: 77 VVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLG 136
Query: 692 LA 697
LA
Sbjct: 137 LA 138
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/34 (67%), Positives = 25/34 (73%)
Frame = +2
Query: 596 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLA 697
TG N KI F+ +FIGVNITFFPQHFLGLA
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLA 52
>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 264 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 413
HH+ T+ I + T+I PT I + + +H T IN +P ++
Sbjct: 14 HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63
>SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)
Length = 558
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 204 LFRNNLCYTSNWVIRIYV*AHHIFTVGIDIDT 299
+F+N+LCY + + +Y H I+ G D+ T
Sbjct: 145 IFQNDLCYHIDGSLSMYADDHQIYHTGSDLST 176
>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
Length = 959
Score = 29.1 bits (62), Expect = 3.6
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 2/145 (1%)
Frame = +3
Query: 84 FISTFILIFWTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYV*A 263
FI ++ + ++ SL+ N TR Y F Y + K + YT I I +
Sbjct: 600 FIESYEYVILSNKSLFHNATRRVYQFDQYTVNENKTATICSNFTDKSYTKKQRIEIGGSS 659
Query: 264 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQ-INYNPNIL*RLGFVFLF 440
+ + + + A +++ V T +F L T G +N + +IL FLF
Sbjct: 660 NVELALTVLTYVGLILSVACLLVVVVT-YSLFSELRTAPGVNLLNLSISILLA---QFLF 715
Query: 441 TVG-GLTGVILANSSIDITLHDTYM 512
VG G TG I I LH ++
Sbjct: 716 LVGSGQTGSKAGCVFIAIVLHYAFL 740
>SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 204 LFRNNLCYTSNWVIRIYV*AHHIFTVGIDIDT 299
+F+N+LCY + + +Y H I+ G D+ T
Sbjct: 496 IFQNDLCYHIDGNLSMYADDHQIYHTGSDLST 527
>SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22)
Length = 884
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 204 LFRNNLCYTSNWVIRIYV*AHHIFTVGIDIDT 299
+F+N+LCY + + +Y H I+ G D+ T
Sbjct: 356 IFQNDLCYHIDGNLSMYADDHQIYHTGSDLST 387
>SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018)
Length = 491
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 204 LFRNNLCYTSNWVIRIYV*AHHIFTVGIDIDT 299
+F+N+LCY + +Y H I+ G D+ T
Sbjct: 382 IFQNDLCYHIYGSLSMYADDHQIYHTGSDLST 413
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 583 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIF 672
+ FIY + FL +KN F+ YW+ YN F
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAF 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,744,641
Number of Sequences: 59808
Number of extensions: 238567
Number of successful extensions: 421
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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