Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0369
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    27   9.8  
CU457741-21|CAM36361.1|  231|Caenorhabditis elegans Hypothetical...    27   9.8  
AL132859-7|CAB60495.2|  231|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical
           protein F02H6.6 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 678 PMVNAPKAPFCLGVP*NFQSCYLHTSLNRYLPTKLC 571
           P  N P AP C+G P    + Y   S ++  PT  C
Sbjct: 82  PRTNGPGAPCCIGTPKIVNNWYHCASTSQTTPTAPC 117


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical
           protein T28B8.3a protein.
          Length = 1838

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 606 YVNNTIESFKERLNKKEL-WE 665
           ++   +ESFKERLNK+ L WE
Sbjct: 327 FLEQFMESFKERLNKERLNWE 347


>CU457741-21|CAM36361.1|  231|Caenorhabditis elegans Hypothetical
           protein Y39C12A.9 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 118 YYFVKLHEVAVEILDVHWSY*AETAIPLNPRKNINRLSQIHDSRF 252
           ++F ++   AV IL   W +  +T +P  P K    +S I DS F
Sbjct: 164 FFFKRMGRTAVSILKFFWRFFEDTVVP--PAK--EAISNIFDSSF 204


>AL132859-7|CAB60495.2|  231|Caenorhabditis elegans Hypothetical
           protein Y39C12A.9 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 118 YYFVKLHEVAVEILDVHWSY*AETAIPLNPRKNINRLSQIHDSRF 252
           ++F ++   AV IL   W +  +T +P  P K    +S I DS F
Sbjct: 164 FFFKRMGRTAVSILKFFWRFFEDTVVP--PAK--EAISNIFDSSF 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,999,862
Number of Sequences: 27780
Number of extensions: 243435
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)