Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0368
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    22   5.6  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   5.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.4  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   9.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.7  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +2

Query: 335 LTVFCQGYNVSFFLH*KYLLQVTIEYT 415
           ++VF +  + + F+H K ++Q+T++ T
Sbjct: 48  VSVFYRAKDYAKFIHIKAVVQITLDAT 74


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +2

Query: 335 LTVFCQGYNVSFFLH*KYLLQVTIEYT 415
           ++VF +  + + F+H K ++Q+T++ T
Sbjct: 48  VSVFYRAKDYAKFIHIKAVVQITLDAT 74


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 225 TSKLAEIFDEAFKTSKKL 172
           TSK+ ++ +E +KTS  L
Sbjct: 213 TSKIYKVLEEKYKTSGSL 230


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 463 NIFKNYCICLYHV*QLLRSYKI 528
           N+  NYCIC Y    +L S  I
Sbjct: 42  NLSINYCICGYIFSAILFSLSI 63


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 461 KIYLKITAFAYITYSNYYD 517
           +IY  +T    +TY +YY+
Sbjct: 348 QIYQPVTNLTNLTYPSYYN 366


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,427
Number of Sequences: 336
Number of extensions: 2523
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)