Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0368
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0231 + 14014243-14014390,14015053-14015141,14017859-140179...    28   8.3  

>01_03_0231 +
           14014243-14014390,14015053-14015141,14017859-14017949,
           14018088-14018215,14018703-14018784,14019022-14019081,
           14019160-14019251,14019342-14019462,14019873-14019928,
           14020193-14020272,14020774-14020820,14020940-14020989,
           14021304-14021366,14021515-14021595,14021703-14021717,
           14021875-14021985,14022072-14022147,14022350-14022492,
           14022721-14022794,14023364-14023454,14023589-14023687
          Length = 598

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 425 RIIQYILLLLEVNIFNEEK-N*HYNLDKIPSGRNGLLYFNSGLEIVKRPTNDIN 267
           R   +I L+ ++++  ++     YN DK+P G+        G +++KR +N I+
Sbjct: 249 RTASFISLICDISMMKQQMVEIGYNADKLPLGKLSKSTILKGYDVLKRISNVIS 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,019,918
Number of Sequences: 37544
Number of extensions: 170064
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)