Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0368
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)                   29   3.6  

>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = -1

Query: 338  SGRNG--LLYFNSGLEIVKRPTNDINLHRNQISKYSSNLAR--LNLQRYLTKP 192
            +G NG  +L  N G  +   PT   +LH+ +++K+S  L++  LN+  +L KP
Sbjct: 4388 TGGNGDRILKENKGELLKSEPTQKKHLHKVRLNKHSKRLSKSQLNVLFHLMKP 4440


>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
          Length = 1332

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
 Frame = +2

Query: 323  VHFFLTVFCQGYNVSFFLH*KY--LLQVTIEYTELFGYYSHILVF--------RAYKIYL 472
            +HFF+  FC GY   F     Y  L   T +Y    G++  + VF          Y IYL
Sbjct: 1178 LHFFVLFFCSGY-APFMGSDWYNELRDPTYQYKLDIGHFMGLKVFFFSIGAVYLIYLIYL 1236

Query: 473  KITAFAYITYSNYYDHIKLK 532
             I A++ +    Y+D I+LK
Sbjct: 1237 LIRAYSELKAMPYFD-IRLK 1255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,958,835
Number of Sequences: 59808
Number of extensions: 230448
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)