Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0368
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass...    28   5.6  
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass...    28   5.6  
Z29095-13|CAA82357.1|  810|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z22181-15|CAA80191.1|  810|Caenorhabditis elegans Hypothetical p...    28   7.4  
AF326940-1|AAG49390.1|  810|Caenorhabditis elegans replication l...    28   7.4  
Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical p...    27   9.8  
AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical ...    27   9.8  
AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform a protein.
          Length = 1020

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 385 FLMKKKTDIITLTKYRQEEMDYFIL 311
           F+ KK   I+ L+K RQ+ +D FIL
Sbjct: 402 FMSKKNDKIVKLSKSRQDRVDKFIL 426


>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform b protein.
          Length = 1061

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 385 FLMKKKTDIITLTKYRQEEMDYFIL 311
           F+ KK   I+ L+K RQ+ +D FIL
Sbjct: 443 FMSKKNDKIVKLSKSRQDRVDKFIL 467


>Z29095-13|CAA82357.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK632.1a protein.
          Length = 810

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 332 RNGLLYFNSGLEIVKRPTNDINLHRNQISKYSSNLA-RLNLQRYLTKP 192
           +N  +Y ++  E+V+   N I ++   + K+S+NLA  + LQ Y   P
Sbjct: 35  KNEFIYKSAMKELVQPEKNTIFINMQHLYKFSNNLATTIELQYYRVYP 82


>Z22181-15|CAA80191.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK632.1a protein.
          Length = 810

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 332 RNGLLYFNSGLEIVKRPTNDINLHRNQISKYSSNLA-RLNLQRYLTKP 192
           +N  +Y ++  E+V+   N I ++   + K+S+NLA  + LQ Y   P
Sbjct: 35  KNEFIYKSAMKELVQPEKNTIFINMQHLYKFSNNLATTIELQYYRVYP 82


>AF326940-1|AAG49390.1|  810|Caenorhabditis elegans replication
           licensing factor MCM2/3/5-type protein protein.
          Length = 810

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 332 RNGLLYFNSGLEIVKRPTNDINLHRNQISKYSSNLA-RLNLQRYLTKP 192
           +N  +Y ++  E+V+   N I ++   + K+S+NLA  + LQ Y   P
Sbjct: 35  KNEFIYKSAMKELVQPEKNTIFINMQHLYKFSNNLATTIELQYYRVYP 82


>Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical protein
            T25E12.4a protein.
          Length = 1101

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 422  FGYYSHILVFRAYKIYLKITAFAYITYSNYYDHI 523
            F Y+ H+LV   +K Y   + F  I + N+  HI
Sbjct: 1061 FSYFLHLLVTYPFKFYFVFSCF-IIFFPNFLTHI 1093


>Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical
            protein T25E12.4a protein.
          Length = 1101

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 422  FGYYSHILVFRAYKIYLKITAFAYITYSNYYDHI 523
            F Y+ H+LV   +K Y   + F  I + N+  HI
Sbjct: 1061 FSYFLHLLVTYPFKFYFVFSCF-IIFFPNFLTHI 1093


>AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical
            protein T25E12.4a protein.
          Length = 1101

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 422  FGYYSHILVFRAYKIYLKITAFAYITYSNYYDHI 523
            F Y+ H+LV   +K Y   + F  I + N+  HI
Sbjct: 1061 FSYFLHLLVTYPFKFYFVFSCF-IIFFPNFLTHI 1093


>AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical
            protein T25E12.4a protein.
          Length = 1101

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 422  FGYYSHILVFRAYKIYLKITAFAYITYSNYYDHI 523
            F Y+ H+LV   +K Y   + F  I + N+  HI
Sbjct: 1061 FSYFLHLLVTYPFKFYFVFSCF-IIFFPNFLTHI 1093


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,145,145
Number of Sequences: 27780
Number of extensions: 202296
Number of successful extensions: 354
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)