Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0367
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.0  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.4  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   4.2  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   9.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +3

Query: 120 NLHFFSIKRTKAQIITQVYNYLTKVEYNSKTL-YFYVEPLSAL*QLLWSTKTGSHLKRLK 296
           +LH    KR+ A +   + + L    YN + + YFY   ++    LL+   +G     L 
Sbjct: 25  SLHSLKNKRSGASLQVGILDSLVFKCYNLRRIYYFYCVSITFNVHLLFLLCSGYFTVHLL 84

Query: 297 ETLPLLRLRAHFL 335
              P +    HFL
Sbjct: 85  FYCPFIIFTVHFL 97


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 72  KIVDYYFRLVFHFNTLR*YS 13
           K+VDY+ +L+ HF   + Y+
Sbjct: 131 KLVDYHHQLLGHFGATKVYN 150


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 596 ILPISTAKGVKSKVPISTSNY 534
           ++P  T +G+KS++ +  SNY
Sbjct: 587 LIPKGTPEGMKSQLFVMISNY 607


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 208 LELYSTFVK*LYTCVMICAF 149
           ++LY  F    + CV++C F
Sbjct: 150 VQLYFQFYYTYFLCVIVCIF 169


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,966
Number of Sequences: 336
Number of extensions: 4126
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)