Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0367
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb...    31   0.16 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    29   0.64 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.4  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   6.0  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.0  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    25   7.9  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   7.9  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    25   7.9  

>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 609 GMYQHPSHFYCQRRQIKSSNFHQ 541
           GMY+H SH  CQ+++    N+H+
Sbjct: 25  GMYEHRSHIQCQKQKEIDENYHR 47


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
 Frame = +3

Query: 108  GIVNNLHFFSI----KRTKAQIITQVYNYLTKVE-----YNSKTLYFYVEPLSAL*QLLW 260
            G+VN L F  I    K   ++ ++Q+ +Y TK+       N KTL FY +PL A+  L W
Sbjct: 1123 GVVNFLIFAGISLDLKTQISEFLSQLCSYFTKIVDGTVIENDKTLDFYEKPLQAV--LYW 1180


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -1

Query: 608  VCTNILPISTAKGVKSKVPISTSNYTKS*I*LRISTLI*SHTPGAFSLCL 459
            V  +  PI+++ G+ +  PI++S+   S   +  ST++ S TP   S  L
Sbjct: 929  VLNSSTPITSSTGLNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTAL 978


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 655 LPTSIYWR*S-ELSLHWYVPTSFPFLLPKASNQKFQFPPVITQNLKY 518
           LP S Y     + +LH++ P SFP         K  F  V++Q +KY
Sbjct: 258 LPVSFYDNYKLKYTLHFWQPPSFPDSSTIDDQAKLLFDYVVSQVVKY 304


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 196 NITLKHYIFTLNRSLPSDNSFGRLKRGH 279
           +++LK    +L+RSLPS+N+  ++   H
Sbjct: 62  DVSLKRLSKSLDRSLPSENTIDQISFNH 89


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 364 PDKFVVTRKIRHPVFFSSTTNVQTSHET*LMK 459
           PD+F V + + HP F   ++ +   +ET ++K
Sbjct: 407 PDRFTVKQCLSHPWFARHSSRLTKLYETRILK 438


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 624 SLYRQYILVGKYASIKLIKYW 686
           +LYRQ I+VGK+A+   + +W
Sbjct: 159 ALYRQRIVVGKHAAHFSLDHW 179


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 120 NLHFFSIKRTKAQIITQVYNYLTKVEYNSKTLYFYVEP 233
           N+  F +   +  I  Q    L K+  +SK LY+ VEP
Sbjct: 169 NISIFEVDGQRQPIYCQNLCLLAKMFLHSKMLYYDVEP 206


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 156 QIITQVYNYLTKVEYNSKTLYF 221
           +I+ Q  NYL  VE+N+ T +F
Sbjct: 183 EILKQFPNYLKAVEFNTGTTFF 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,734
Number of Sequences: 5004
Number of extensions: 64462
Number of successful extensions: 338
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)