Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0367
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0249 - 3284107-3286377                                           29   3.6  
11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570...    29   4.7  

>04_01_0249 - 3284107-3286377
          Length = 756

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 451 VMSHARFGRWLLRKKKPGALSFWSRQICLVNKINPMVYYKK*ARSLNSGSVSFKR 287
           ++S     R L   KKP     WS+ I   N ++    Y+  AR+ N  S  FKR
Sbjct: 364 IVSDLNLFRILDNNKKPTRYRMWSQTIGQYNLLHECTRYESEARTKNWKSGMFKR 418


>11_01_0692 -
           5700394-5700474,5700546-5702675,5705033-5706169,
           5709679-5709975
          Length = 1214

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 123 LHFFSIKRTKAQIITQVYNYLTKVEY-NSKTLYFYVEPLS 239
           L+  S    K ++ T+V   LTK+EY N  T +FY E L+
Sbjct: 714 LNLSSCSYMKGRLETEVLGTLTKLEYLNLSTEHFYTERLA 753


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,629,868
Number of Sequences: 37544
Number of extensions: 368097
Number of successful extensions: 611
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)