Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0367
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   1.2  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.6  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +3

Query: 522 LRFCVITGGNWNF*FDAFGSRNGKDVGTYQWRLNSLYRQYILVGK 656
           LR C++  GNW          N  +   ++ R+     + I+ GK
Sbjct: 5   LRICIVGSGNWGSTIAKIIGINAANFSNFEDRVTMYVYEEIINGK 49


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 407 FFPQQPTSKPRMRHNS*KGKGRRRPVY 487
           + PQ     PR+R       G  RPVY
Sbjct: 105 YIPQPRPPHPRLRREPEAEPGNNRPVY 131



 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 407 FFPQQPTSKPRMRHNS*KGKGRRRPVY 487
           + PQ     PR+R       G  RPVY
Sbjct: 131 YIPQPRPPHPRLRREPEAEPGNNRPVY 157


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 418 LRKKKPGALSFWSRQICLVNKINPMV 341
           LRKK+  +L  W  ++ ++ K  P++
Sbjct: 373 LRKKQLKSLEDWENEMNIITKGKPLI 398


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 143 KNKSTNHYTS 172
           KN++ NHYTS
Sbjct: 116 KNQNNNHYTS 125


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +3

Query: 99  LNPGIVNNLHFFSIKRTKAQIITQVYNYLTKVEYNSKTLYFYVEPLSAL*QLLWSTKTGS 278
           L PG   N  FFS   T   +I++   + T ++ +  T    V P       L+  + G 
Sbjct: 238 LEPGTNKNGKFFSRSSTSRIVISESLKHFT-IQSSVTTSKMMVSP------RLYDRQNGL 290

Query: 279 HLKRLKETL 305
            L R+  TL
Sbjct: 291 VLSRMNLTL 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,725
Number of Sequences: 438
Number of extensions: 4793
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)