Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0367
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63810.1 68418.m08008 beta-galactosidase, putative / lactase,...    29   3.9  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    29   3.9  
At5g25600.1 68418.m03046 hypothetical protein low similarity to ...    28   6.9  
At3g16555.1 68416.m02115 F-box family protein contains F-box dom...    28   6.9  
At2g37460.1 68415.m04595 nodulin MtN21 family protein similar to...    27   9.1  
At2g24950.1 68415.m02984 hypothetical protein   contains Pfam pr...    27   9.1  

>At5g63810.1 68418.m08008 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase GI:7939621 from
           [Lycopersicon esculentum]; contains Pfam profile
           PF01301: Glycosyl hydrolases family 35
          Length = 741

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 157 KSLHKYIII*QKLNITLKHYIFTLNRSLPSD 249
           K LHK I++ + L I+ +H  FTL  SL +D
Sbjct: 338 KDLHKAIMLSENLLISGEHQNFTLGHSLEAD 368


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +3

Query: 120  NLHFFSIKRTKAQIITQVY---NYLTKVEYNSKTLYFYVEPLSAL*QLLWSTKTGSHLKR 290
            +L +F + R     I + Y   N+L KVE+++  +Y ++E LS    L  S  T     R
Sbjct: 2305 DLKYFQVIRESHIRICEAYSPRNHLLKVEHSTFLIYIFLEILSLSNFLFLSCSTIQQCSR 2364

Query: 291  LKETLP 308
                LP
Sbjct: 2365 RSNYLP 2370


>At5g25600.1 68418.m03046 hypothetical protein low similarity to
           zinc finger protein [Arabidopsis thaliana] GI:976277
          Length = 331

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 607 YVPTSFPFLLPKASNQKFQFPPVITQNLKYNCG 509
           ++P+S P + PKA +     P  I    +Y CG
Sbjct: 261 HLPSSVPLVSPKALSDDSTTPTAINDQSRYACG 293


>At3g16555.1 68416.m02115 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 349

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = -1

Query: 566 KSKVPISTSNYTKS*I*LRISTLI*SHTPGAFSLCLFMSYVSCEVWTLVV---EEKKTGC 396
           K K+  S +N +   + + + TL  ++ P  F +C  +SY   +  TL++   +E  +  
Sbjct: 253 KKKIDSSNNNGSDEVVWISLLTLPPNNLPNLFIVCYGISYFIYDKTTLIIYCEDENTSAA 312

Query: 395 LIFLVTTNLSGK 360
            I+++  +L  K
Sbjct: 313 CIYIIRGDLFKK 324


>At2g37460.1 68415.m04595 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 380

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 99  LNPGIVNNLHFFSIKRTKAQIITQVYNYLTKVEY 200
           L P I  NL++  +K T A   T +YN L  + +
Sbjct: 87  LEPVIDQNLYYLGMKYTTATFATAMYNVLPAITF 120


>At2g24950.1 68415.m02984 hypothetical protein   contains Pfam
           profile PF03080: Arabidopsis proteins of unknown
           function
          Length = 411

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 117 NNLHFFSIKRTKAQIITQVYNYLTKV 194
           NN H F++ RTK +II ++YN  T +
Sbjct: 172 NNQHHFAVSRTK-KIIGKIYNGATMI 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,843,838
Number of Sequences: 28952
Number of extensions: 321883
Number of successful extensions: 678
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)