Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0366
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P35603 Cluster: AP-2 complex subunit mu; n=23; Eukaryot...    78   2e-13
UniRef50_Q96CW1 Cluster: AP-2 complex subunit mu-1; n=94; Fungi/...    77   3e-13
UniRef50_Q6CUL9 Cluster: Similar to sp|Q99186 Saccharomyces cere...    37   0.55 
UniRef50_Q6CC50 Cluster: Yarrowia lipolytica chromosome C of str...    36   1.3  
UniRef50_A5JZZ1 Cluster: Clathrin coat assembly protein AP50, pu...    35   1.7  
UniRef50_Q7RAH7 Cluster: Clathrin coat assembly protein ap50; n=...    33   8.9  

>UniRef50_P35603 Cluster: AP-2 complex subunit mu; n=23;
           Eukaryota|Rep: AP-2 complex subunit mu - Caenorhabditis
           elegans
          Length = 441

 Score = 78.2 bits (184), Expect = 2e-13
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 110
           YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC
Sbjct: 409 YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 441


>UniRef50_Q96CW1 Cluster: AP-2 complex subunit mu-1; n=94;
           Fungi/Metazoa group|Rep: AP-2 complex subunit mu-1 -
           Homo sapiens (Human)
          Length = 435

 Score = 77.4 bits (182), Expect = 3e-13
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 110
           YLKVFEPKLNYSDHDVIKWVRYIGRSG+YETRC
Sbjct: 403 YLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435


>UniRef50_Q6CUL9 Cluster: Similar to sp|Q99186 Saccharomyces
           cerevisiae YOL062c APM4 AP-2 complex subunit; n=3;
           Saccharomycetales|Rep: Similar to sp|Q99186
           Saccharomyces cerevisiae YOL062c APM4 AP-2 complex
           subunit - Kluyveromyces lactis (Yeast) (Candida
           sphaerica)
          Length = 475

 Score = 36.7 bits (81), Expect = 0.55
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 107
           +LK  EP+LNY     +KW++YI  SG YE R
Sbjct: 446 HLKCQEPQLNYQP---VKWIKYISHSGAYEIR 474


>UniRef50_Q6CC50 Cluster: Yarrowia lipolytica chromosome C of strain
           CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
           lipolytica|Rep: Yarrowia lipolytica chromosome C of
           strain CLIB122 of Yarrowia lipolytica - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 419

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 107
           YLKVFE K NY+    +KWVRY+ + G YE R
Sbjct: 391 YLKVFE-KSNYN---TVKWVRYLMKGGSYEIR 418


>UniRef50_A5JZZ1 Cluster: Clathrin coat assembly protein AP50,
           putative; n=2; Plasmodium|Rep: Clathrin coat assembly
           protein AP50, putative - Plasmodium vivax
          Length = 611

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 101
           YLKVFE K NY    +IKW++Y+  SG+Y+
Sbjct: 584 YLKVFE-KSNYK---IIKWIKYLTESGIYQ 609


>UniRef50_Q7RAH7 Cluster: Clathrin coat assembly protein ap50; n=5;
           Plasmodium (Vinckeia)|Rep: Clathrin coat assembly
           protein ap50 - Plasmodium yoelii yoelii
          Length = 601

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 101
           YLKV+E K NY    +IKW++Y+  SG Y+
Sbjct: 574 YLKVYE-KSNYK---IIKWIKYLTESGAYQ 599


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,733,738
Number of Sequences: 1657284
Number of extensions: 6158010
Number of successful extensions: 9815
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9813
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)