Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0366
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    33   0.052
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    30   0.28 
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   4.5  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSG 92
           YLK+ EPKLNY     + WVRY+ ++G
Sbjct: 396 YLKITEPKLNY---HAMPWVRYVTQNG 419


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 107
           YL+V EP  + S +  IKWVRY  R+G  E R
Sbjct: 416 YLRVSEP--SNSKYKSIKWVRYSTRAGTCEIR 445


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 454 IRKLKIIT*GISFNVQDCSLFHVPFK 377
           IR  K+ T  I + +Q+CSL HVPF+
Sbjct: 183 IRPSKVHT-EIQWCLQNCSLIHVPFE 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,546
Number of Sequences: 5004
Number of extensions: 27687
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)