Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0366
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760...    36   0.041
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732...    29   2.7  
07_03_1436 - 26543846-26546806                                         29   2.7  
11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549     28   6.2  
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467...    28   6.2  
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604...    28   6.2  
10_03_0002 - 6858257-6861205                                           28   8.2  

>02_05_0373 +
           28374298-28374380,28375126-28375303,28375975-28376065,
           28376162-28376256,28376379-28376468,28376789-28376837,
           28376941-28377079,28377224-28377340,28377437-28377527,
           28377604-28377746,28378009-28378123,28378439-28378483,
           28378565-28378645
          Length = 438

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 110
           +LKV+E     S ++ ++WVRYI R+G YE RC
Sbjct: 410 FLKVWEK----SGYNTVEWVRYITRAGSYEIRC 438


>10_08_1024 +
           22371260-22371481,22371514-22372188,22372291-22373236,
           22389377-22389552
          Length = 672

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 48  PSNSASVRTPSGSLVP 1
           P+NSAS RTP+GS VP
Sbjct: 150 PANSASTRTPTGSRVP 165


>07_03_1436 - 26543846-26546806
          Length = 986

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 48  PSNSASVRTPSGSLVP 1
           P+NSAS RTP+GS VP
Sbjct: 326 PANSASTRTPTGSRVP 341


>11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549
          Length = 792

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -2

Query: 48  PSNSASVRTPSGSLVP 1
           P NSAS RTP+GS VP
Sbjct: 271 PVNSASTRTPTGSRVP 286


>05_06_0262 -
           26746180-26746278,26746371-26746493,26746584-26746725,
           26746824-26746921,26747012-26747108,26747215-26747322,
           26747900-26748003,26748170-26748268,26748373-26748435,
           26748538-26748687,26748769-26748900
          Length = 404

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 107
           YLK+ E     S +  + WVRYI  +G YE R
Sbjct: 375 YLKIIEK----SGYQALPWVRYITMAGEYELR 402


>01_06_0412 +
           29159918-29160046,29160148-29160297,29160385-29160447,
           29160540-29160716,29160796-29160899,29162142-29162249,
           29162336-29162432,29162540-29162637,29162718-29162859,
           29162941-29163063,29163161-29163259
          Length = 429

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 107
           YLK+ E     S +  + WVRYI  +G YE R
Sbjct: 400 YLKIIEK----SGYQALPWVRYITMAGEYELR 427


>10_03_0002 - 6858257-6861205
          Length = 982

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -2

Query: 48  PSNSASVRTPSGSLVP 1
           P NS SVRTP+GS VP
Sbjct: 323 PVNSESVRTPTGSRVP 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,316,818
Number of Sequences: 37544
Number of extensions: 144065
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)