Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0366
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U36188-1|AAA93254.1|  435|Homo sapiens assembly protein 50 protein.    77   5e-14
D63475-1|BAA09762.2|  438|Homo sapiens KIAA0109 protein.               77   5e-14
BT007308-1|AAP35972.1|  435|Homo sapiens adaptor-related protein...    77   5e-14
BC014030-1|AAH14030.1|  435|Homo sapiens adaptor-related protein...    77   5e-14
BC013796-1|AAH13796.1|  433|Homo sapiens adaptor-related protein...    77   5e-14
BC004996-1|AAH04996.1|  435|Homo sapiens adaptor-related protein...    77   5e-14

>U36188-1|AAA93254.1|  435|Homo sapiens assembly protein 50 protein.
          Length = 435

 Score = 77.4 bits (182), Expect = 5e-14
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 110
           YLKVFEPKLNYSDHDVIKWVRYIGRSG+YETRC
Sbjct: 403 YLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435


>D63475-1|BAA09762.2|  438|Homo sapiens KIAA0109 protein.
          Length = 438

 Score = 77.4 bits (182), Expect = 5e-14
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 110
           YLKVFEPKLNYSDHDVIKWVRYIGRSG+YETRC
Sbjct: 406 YLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 438


>BT007308-1|AAP35972.1|  435|Homo sapiens adaptor-related protein
           complex 2, mu 1 subunit protein.
          Length = 435

 Score = 77.4 bits (182), Expect = 5e-14
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 110
           YLKVFEPKLNYSDHDVIKWVRYIGRSG+YETRC
Sbjct: 403 YLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435


>BC014030-1|AAH14030.1|  435|Homo sapiens adaptor-related protein
           complex 2, mu 1 subunit protein.
          Length = 435

 Score = 77.4 bits (182), Expect = 5e-14
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 110
           YLKVFEPKLNYSDHDVIKWVRYIGRSG+YETRC
Sbjct: 403 YLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435


>BC013796-1|AAH13796.1|  433|Homo sapiens adaptor-related protein
           complex 2, mu 1 subunit protein.
          Length = 433

 Score = 77.4 bits (182), Expect = 5e-14
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 110
           YLKVFEPKLNYSDHDVIKWVRYIGRSG+YETRC
Sbjct: 401 YLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 433


>BC004996-1|AAH04996.1|  435|Homo sapiens adaptor-related protein
           complex 2, mu 1 subunit protein.
          Length = 435

 Score = 77.4 bits (182), Expect = 5e-14
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 110
           YLKVFEPKLNYSDHDVIKWVRYIGRSG+YETRC
Sbjct: 403 YLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,438,437
Number of Sequences: 237096
Number of extensions: 839994
Number of successful extensions: 936
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)