Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0366
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L26290-1|AAA27981.1|  441|Caenorhabditis elegans clathrin-associ...    78   5e-15
AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : short...    78   5e-15
AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : short...    78   5e-15
Z83115-5|CAJ85757.1|   58|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical pr...    29   3.2  
L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein ( Caeno...    28   5.6  

>L26290-1|AAA27981.1|  441|Caenorhabditis elegans
           clathrin-associated protein homologueprotein.
          Length = 441

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 110
           YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC
Sbjct: 409 YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 441


>AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform b protein.
          Length = 435

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 110
           YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC
Sbjct: 403 YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 435


>AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform a protein.
          Length = 441

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 110
           YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC
Sbjct: 409 YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 441


>Z83115-5|CAJ85757.1|   58|Caenorhabditis elegans Hypothetical
           protein K11D2.3b protein.
          Length = 58

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 107
           YLK+ E     S +  + WVRYI ++G YE R
Sbjct: 29  YLKIIEK----SGYQALPWVRYITQNGEYEMR 56


>Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical
           protein K11D2.3a protein.
          Length = 422

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 107
           YLK+ E     S +  + WVRYI ++G YE R
Sbjct: 393 YLKIIEK----SGYQALPWVRYITQNGEYEMR 420


>L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein (
           Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
          Length = 422

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 107
           YLK+ E +     +  + WVRYI ++G YE R
Sbjct: 393 YLKIIEKR----GYQALPWVRYITQNGEYEMR 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,635,082
Number of Sequences: 27780
Number of extensions: 150168
Number of successful extensions: 252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)