Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0366
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun...    34   0.079
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun...    29   3.9  
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun...    28   5.2  

>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 438

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 110
           +LKV+E     S ++ ++WVRYI ++G YE RC
Sbjct: 410 FLKVWEK----SGYNTVEWVRYITKAGSYEIRC 438


>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 107
           YLK+ E K  Y  H    WVRYI  +G YE R
Sbjct: 399 YLKIIE-KSGYQAHP---WVRYITMAGEYELR 426


>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 12  YLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 107
           YLK+ E     S +  + WVRYI  +G YE R
Sbjct: 399 YLKIIEK----SGYQALPWVRYITMAGEYELR 426


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,662,888
Number of Sequences: 28952
Number of extensions: 127166
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)