Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0365
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    30   0.37 
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    29   0.85 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   1.5  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   2.6  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   2.6  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   7.9  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   7.9  

>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 688 IHNLSYEIHCNLYCRSY-WSVFRIRNIVDERK 596
           +HN +  ++CN+ C  Y W +  I N + E K
Sbjct: 775 LHNPTVAVNCNMLCAKYAWKLEEIENYIMENK 806


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = -3

Query: 548 KKMLLVKKINTHSIRQ*AHFVIPLTYNTQNVLNTYELHLHFIDKI 414
           ++ L  +KIN  S R  + + +P   NT +++NT+++ +H  D +
Sbjct: 87  EETLKKEKINNCSFRLGSIYKLPFPDNTFDIVNTHQVLVHLQDPV 131


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -1

Query: 301  LHQFNKLNLTKLELNDVKTSTDDIKSKEILILQKI 197
            L  FN++N  K+EL++  T+TD   +K +  L+K+
Sbjct: 1294 LDAFNQVNFKKMELDNRLTTTDAEFTKVVADLEKL 1328


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -1

Query: 529 KKLTLIRSVNELTL*YHLLTIPKMFLTLMSFTYISLTKSLSESDNLQ 389
           K  T + S NEL    H   IPK FL L   TY+ L K +    N+Q
Sbjct: 426 KLFTDLPSNNELFSFIH--NIPKEFLHLSDSTYLDLEKQVLRIFNVQ 470


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 447 SVKNILGIVSKWYYKVSSLTDRMSVNFF 530
           S++++ G+++KWY K S   +   VN+F
Sbjct: 846 SLEDLRGLLTKWYSKASKGPNIHDVNYF 873


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 115 FKNANLLHLSKYKNTHVQTLFLSSLVRKFSVRSIFL 222
           +K    L LSK   TH+ + FLS L   F   SIFL
Sbjct: 75  YKGDKRLVLSKVLITHIISAFLSFLSAIFVFFSIFL 110


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 558 NVACYKLHWQLVSFLSSTI 614
           +VACY  HW++   ++ST+
Sbjct: 770 DVACYLNHWEVAGCVASTL 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,935
Number of Sequences: 5004
Number of extensions: 48299
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)