Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0365
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL023816-4|CAA19433.2|  344|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z37140-5|CAA85499.1|  312|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z37140-4|CAA85498.1|  308|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical
           protein F21D9.5 protein.
          Length = 839

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 386 KERSVFLKLWLLNSLQCNLDLVKVLS 309
           K+ +VFLKLW++     NL L+++ S
Sbjct: 100 KDINVFLKLWIIGCANINLKLLEINS 125


>AL023816-4|CAA19433.2|  344|Caenorhabditis elegans Hypothetical
           protein T05G11.6 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = -1

Query: 310 VWDLHQFNKLNLTKLELNDVKTSTDDIKSKEILILQKIFLLMRTETMFAHVYFCIY 143
           VW +HQ  K+  +    +   + +++  +K +++   IFLL    T    V+  +Y
Sbjct: 228 VWLIHQLKKMRRSASTRSSANSDSNERFTKLVVLFNVIFLLSTAPTEIILVFEYVY 283


>Z37140-5|CAA85499.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK899.6 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 565 RATNYIGNWSVFFHPQYFLFGKRSNSYDSI 654
           + TNY   +S F      LFG    SYDS+
Sbjct: 112 QCTNYKSEYSTFIQNSKALFGNMLTSYDSL 141


>Z37140-4|CAA85498.1|  308|Caenorhabditis elegans Hypothetical
           protein ZK899.5 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 565 RATNYIGNWSVFFHPQYFLFGKRSNSYDSI 654
           + TNY   +S F      LFG    SYDS+
Sbjct: 112 QCTNYKSEYSTFIQNSKALFGNMLTSYDSL 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,941,794
Number of Sequences: 27780
Number of extensions: 263383
Number of successful extensions: 675
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)