Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0365
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.8  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   4.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 292 IDVNPRLNTLTRSKLHCKLFNSHNFRKTE 378
           +D+N  LN +TR+ L C  F  ++   +E
Sbjct: 548 LDLNSGLNKITRNSLDC-FFTMNDLEPSE 575


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 292 IDVNPRLNTLTRSKLHCKLFNSHNFRKTE 378
           +D+N  LN +TR+ L C  F  ++   +E
Sbjct: 548 LDLNSGLNKITRNSLDC-FFTMNDLEPSE 575


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 651 YKLQCISYDKLWINLD 698
           YK++C+  D  W+  D
Sbjct: 37  YKIECVGDDIAWMKFD 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,723
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)