Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0365
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila...    28   6.9  
At3g28320.1 68416.m03538 hypothetical protein similar to At14a (...    28   6.9  

>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
           to CAF protein [Arabidopsis thaliana] GI:6102610;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF03368:
           Domain of unknown function, PF00636: RNase3 domain,
           PF00035: Double-stranded RNA binding motif
          Length = 1676

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 224 ERNIDLTENFLTNEDRNNV 168
           E+ +DL ENF  NEDR N+
Sbjct: 628 EKEMDLIENFKVNEDRMNL 646


>At3g28320.1 68416.m03538 hypothetical protein similar to At14a
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 280

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 295 QFNKLNLTKLELNDVKTSTDDIKSKEILILQKIFLLMRTETMFAHVYF 152
           QF  +N  +  L D  T T +  +KEI  +QK    + T T+ +HV F
Sbjct: 72  QFELMNKQQESLFDRVTETKERIAKEIEEVQKRISNVNTATIVSHVVF 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,775,761
Number of Sequences: 28952
Number of extensions: 227334
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)