Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0364
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.5  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    26   4.5  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.0  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   7.9  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 334 VFWGYIVLFGLWYSGYLVVTNW 269
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -3

Query: 313 LFGLWYSGYLVVTNWSRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIAK 134
           LF +  SGYL      + GF +++   TS GLT   ++G        GT    +  GI+K
Sbjct: 389 LFSVDASGYL------KMGFMANLEVLTSKGLTICGMIGNGVGENKKGTNISDTQIGISK 442

Query: 133 LTAAK 119
             + K
Sbjct: 443 TNSWK 447


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 419 AEAKSADIKVEEPAAQPEDSKTEVQATVAEFQKKKNLVLL 538
           AEA + D   + P       K  V  +VAE  +K++L ++
Sbjct: 76  AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVI 115


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +1

Query: 514 KEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVESDAAAIPEIKTPEA 657
           K+ +PS  +   +A   +  PN VK +  D+ P   +      +I  PEA
Sbjct: 560 KDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,466
Number of Sequences: 5004
Number of extensions: 41874
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)