BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0364 (699 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 33 0.17 SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2 SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8) 31 1.2 SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1 SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3 >SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) Length = 242 Score = 33.5 bits (73), Expect = 0.17 Identities = 17/36 (47%), Positives = 22/36 (61%) Frame = +2 Query: 407 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQ 514 E P EA+S D KVE P + E + EV+ATV E + Sbjct: 22 ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVE 57 >SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1143 Score = 30.7 bits (66), Expect = 1.2 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Frame = +2 Query: 428 KSADIKVEEPAAQPEDSKTEVQ---ATVAEFQKKKNLVLLMQKVLPTQLPSFPTW 583 ++ DI VE PA+ +KTE + A + +F++ + L+ +VL + P+ PT+ Sbjct: 781 RNEDIVVEVPASNEPAAKTEDEIRKAEMCKFEQAQEAEDLISEVLKSYAPTLPTY 835 >SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8) Length = 1009 Score = 30.7 bits (66), Expect = 1.2 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +3 Query: 114 IAFAAVSLAMPVAEE--KDVVPAQPILEVAPKIDDSVKPTEVAAATEEKKP 260 +A A +A + EE D+ A P LE A K D++KP++++ K P Sbjct: 732 VANEAAGVAQGIKEECEGDLAEALPALEAALKALDTLKPSDISMVKSMKNP 782 >SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 598 Score = 29.9 bits (64), Expect = 2.1 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Frame = -3 Query: 268 SRFGFFSSVAAATSVGLTESSIL----GATSRIG*AGTTSFSSATGIA 137 SR G SSV A+SVGL + L G SR G A S G+A Sbjct: 412 SRVGLASSVGLASSVGLASRASLALRAGLASRAGLASRVGLPSCVGLA 459 Score = 28.7 bits (61), Expect = 4.8 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = -3 Query: 268 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 137 SR G S A+ VG +S +G SR+G A + +S+ G+A Sbjct: 388 SRVGLVSRAGLASRVG--RASRVGLASRVGLASSVGLASSVGLA 429 Score = 28.3 bits (60), Expect = 6.3 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -3 Query: 268 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 137 SR G S V + VGL +S +G SR+G A + +S G+A Sbjct: 442 SRAGLASRVGLPSCVGL--ASRVGLASRVGLANSVGLASRVGLA 483 Score = 28.3 bits (60), Expect = 6.3 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -3 Query: 259 GFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 137 G S V A+ VGL S +G SR+G A + +S G+A Sbjct: 457 GLASRVGLASRVGLANS--VGLASRVGLASSVGLASRVGLA 495 Score = 28.3 bits (60), Expect = 6.3 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -3 Query: 268 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIAKL 131 SR G S A GL S +G SR+G A +S+ G+A L Sbjct: 496 SRVGLVSRAGLALRAGLASS--VGLVSRVGLASRVGRASSVGLASL 539 Score = 27.9 bits (59), Expect = 8.4 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = -3 Query: 268 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGI 140 SR G SSV A+ VGL +S +G SR G A +S+ G+ Sbjct: 478 SRVGLASSVGLASRVGL--ASRVGLVSRAGLALRAGLASSVGL 518 >SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1438 Score = 28.7 bits (61), Expect = 4.8 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = +2 Query: 401 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAE 508 ++E+P +A ++ + E PAA+PE + E +A V + Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVED 622 >SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1643 Score = 28.3 bits (60), Expect = 6.3 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +2 Query: 425 AKSADIKVEEPAAQPEDSKTEVQATVAEFQKKKNLVLLMQK 547 A AD+ EEPA++ ++TE+ E K K+L ++ Q+ Sbjct: 340 AYMADVDDEEPASESLATRTEISELYTESAKLKSLGVIHQE 380 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,988,942 Number of Sequences: 59808 Number of extensions: 305576 Number of successful extensions: 1271 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1026 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1258 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1829596184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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