Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0364
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z73102-6|CAA97412.1| 522|Caenorhabditis elegans Hypothetical pr... 30 1.8
U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical pr... 30 1.8
U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical pr... 30 1.8
AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin p... 30 1.8
AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin p... 30 1.8
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 28 5.6
AC006645-9|AAF39841.2| 293|Caenorhabditis elegans Nematode asta... 28 5.6
U21310-2|AAA62521.1| 322|Caenorhabditis elegans T box family pr... 27 9.8
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 27 9.8
AL132898-20|CAC14415.2| 243|Caenorhabditis elegans Hypothetical... 27 9.8
AL021572-2|CAA16518.1| 415|Caenorhabditis elegans Hypothetical ... 27 9.8
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 27 9.8
>Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 31.5 bits (68), Expect = 0.60
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 251 EEAEPAPVSNDEVPAIPEAKKDDIAPEDSDI 343
E+ P P +E+P +PE ++ P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562
>Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 31.5 bits (68), Expect = 0.60
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 251 EEAEPAPVSNDEVPAIPEAKKDDIAPEDSDI 343
E+ P P +E+P +PE ++ P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562
>Z73102-6|CAA97412.1| 522|Caenorhabditis elegans Hypothetical
protein B0035.5 protein.
Length = 522
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 520 EKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPK 672
EKP++ +AE D + K ++L V A PE PEA+ K
Sbjct: 280 EKPASLNAEDIRDEKVKVLKAAKVVELKDVVVGQYIASPEFDHPEASQGYK 330
>U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical
protein PAR2.4b protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 129 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 245
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 317 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 353
>U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical
protein PAR2.4a protein.
Length = 804
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 129 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 245
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 515 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 551
>AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin
polymerizing factor-S protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 129 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 245
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 317 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 353
>AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin
polymerizing factor protein.
Length = 804
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 129 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 245
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 515 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 551
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 398 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQKKKNLVLLMQKVL 553
K SE K+ D KVE+ + E +K E Q EFQK+ V ++K L
Sbjct: 715 KESEEVKKTGKNKD-KVEKTKEEVEKAKEEFQKVKEEFQKEVEKVKKVEKEL 765
>AC006645-9|AAF39841.2| 293|Caenorhabditis elegans Nematode astacin
protease protein 2 protein.
Length = 293
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 192 VAPKIDDSVKPTEVAAATEEKKPNL-LQLVTTRYPLYQRPK 311
VAPK+ + K E+A +T+ +K ++L+ T+ P ++ K
Sbjct: 15 VAPKVLEPEKDDEIAVSTQREKTFFDMKLILTKLPTFEPSK 55
>U21310-2|AAA62521.1| 322|Caenorhabditis elegans T box family
protein 11 protein.
Length = 322
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 514 KEEKPSATDAEGSADSAAIIPNMVKKI-DLAPTVESDAAAIPEIKTPEAADAPKLADNP 687
+ E+ S +EG++ +I P KKI D+AP + D + I + ++ P +A+ P
Sbjct: 188 RRERQSPVYSEGTSSEKSISPPPAKKIKDMAPAL-PDYSVISKPNLLQSLIFPMIAEQP 245
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +2
Query: 398 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQKKKN 526
K+ E+ E ++++ +E + PE+ K + T AE+ +++
Sbjct: 1501 KTEEVDGIEREASESSSKESSVAPEEKKNPKKITFAEYNSRRS 1543
>AL132898-20|CAC14415.2| 243|Caenorhabditis elegans Hypothetical
protein Y59A8B.19 protein.
Length = 243
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +3
Query: 81 SIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAATEEKKP 260
SIF + L+ C+A S +P E VP P + I D V+ V E
Sbjct: 3 SIFYLLALIACVANFGFSQDLPAPE----VPEIPEVPDVGAITDQVQVEAVLKLVTELLA 58
Query: 261 NLLQLVTT 284
+L+LVT+
Sbjct: 59 TVLKLVTS 66
>AL021572-2|CAA16518.1| 415|Caenorhabditis elegans Hypothetical
protein W06H3.2 protein.
Length = 415
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 550 SADSAAIIPNMVKKIDLAPTVESDAAAIPEIKTPEAADAPKLADNPVD 693
+A++ A P + +A S AA + PEA DAPK A+ P +
Sbjct: 356 TANAEAEEPEKKTFVTMAAACASKAAKEQDGVAPEAQDAPKEAEAPAE 403
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +2
Query: 398 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQKKKN 526
K+ E+ E ++++ +E + PE+ K + T AE+ +++
Sbjct: 1480 KTEEVDGIEREASESSSKESSVAPEEKKNPKKITFAEYNSRRS 1522
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,757,159
Number of Sequences: 27780
Number of extensions: 231626
Number of successful extensions: 948
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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