Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0363
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P36935 Cluster: Uncharacterized 30.4 kDa protein in S-V...    38   0.31 
UniRef50_Q4L9H0 Cluster: CapI protein; n=1; Staphylococcus haemo...    34   2.9  
UniRef50_A7BPS0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q7RRE3 Cluster: Putative uncharacterized protein PY0078...    33   8.9  

>UniRef50_P36935 Cluster: Uncharacterized 30.4 kDa protein in S-V
           intergenic region; n=1; Enterobacteria phage P2|Rep:
           Uncharacterized 30.4 kDa protein in S-V intergenic
           region - Bacteriophage P2
          Length = 261

 Score = 37.5 bits (83), Expect = 0.31
 Identities = 23/69 (33%), Positives = 36/69 (52%)
 Frame = -1

Query: 648 KITYYYFFIT*IEQKISPT*DHMTQTKLNVVCL*FYIILVNYNTNENEKTICLIKCVFYK 469
           K+   YFF+T I   I+    H+ +T + ++   FYI+L  Y  NE    +     + YK
Sbjct: 88  KLKTSYFFLTRIWGDITKP-PHIIKTIIVILASIFYILLACYIHNEQSVIVRDATGIPYK 146

Query: 468 NLCYFVLSD 442
           N+ Y+V SD
Sbjct: 147 NMMYYVYSD 155


>UniRef50_Q4L9H0 Cluster: CapI protein; n=1; Staphylococcus
           haemolyticus JCSC1435|Rep: CapI protein - Staphylococcus
           haemolyticus (strain JCSC1435)
          Length = 437

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
 Frame = +1

Query: 91  ITSEYFV*GGCLPNSYQTTESFDKLFAVIWFMFPFSVFLSNTRSKIADQFI------VIS 252
           + S Y V    + N  +  E  +KLF + +F+FPF +F  NT + I   +       ++ 
Sbjct: 103 LVSNYLVNWNIIFNVSENQEETEKLFKIAFFLFPF-IFYLNTITYIYHAYFKSYIVNIMQ 161

Query: 253 FLSTFINRQLGNIF 294
           FL+ F+N  +  IF
Sbjct: 162 FLNLFVNCIIIKIF 175


>UniRef50_A7BPS0 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. PS
          Length = 531

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = -2

Query: 275 LLMKVDKKDITIN*SAIFDLVFDRNTL 195
           L+ K+D KDITIN    FDL+F+R TL
Sbjct: 97  LVKKLDLKDITINTLDDFDLLFERGTL 123


>UniRef50_Q7RRE3 Cluster: Putative uncharacterized protein PY00788;
            n=9; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY00788 - Plasmodium yoelii yoelii
          Length = 2485

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = +3

Query: 411  QAKIEFLC*SSHLTQNNKDFCKKHT*LNILFFHFHSYYNLLI*CKIINTLRLTLSESYG 587
            + K+ +L    ++ +NN++    +  +NI   +   Y NL+   +I+N+  + LS+ YG
Sbjct: 1381 ETKLSYLSEHGNMVKNNENIMMNNNIININTANKEKYKNLMKKMEIVNSFTIILSDIYG 1439


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,864,262
Number of Sequences: 1657284
Number of extensions: 11911675
Number of successful extensions: 21666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21660
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)