Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0363
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    30   0.37 
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    27   2.0  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.6  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   7.9  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   7.9  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   7.9  

>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 82  YYLITSEYFV*GGCLPNSYQTTESFDK---LFAVIWFMFPFSVFLSNTRSKIA 231
           ++L  +  F+    + NSY     F+    L+ + WF+F F V L   RS +A
Sbjct: 161 FWLSYASIFIPWFNIQNSYDDPNDFNYAIGLYLICWFIFTFLVLLCTVRSTLA 213


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 139 QTTESFDKLFAVIWFMFPFSVFLSNTRSKIADQFIVISF 255
           Q+ ES   LF +IW +  F   L +    ++   +V+SF
Sbjct: 44  QSGESISDLFLIIWLIGDFFNVLGSIYGNVSSTVLVLSF 82


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 534 LVNYNTNENEKTICLIKCVFYKNLCYFVLS 445
           +  YN NE+++     +CV++  LC  ++S
Sbjct: 752 MTRYNINEDQRNSEASRCVYFLKLCTRIIS 781


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 21  HTISDNHYQSIRFHNENKKKLL 86
           H +SD H Q +    +NKK+L+
Sbjct: 605 HALSDYHMQLMLLEEQNKKRLM 626


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 447 LTQNNKDFCKKHT*LNILFFHFHSYYNLLI 536
           + Q N +FC KH  LNIL+       NL I
Sbjct: 404 ILQKNAEFCSKH--LNILWLWLFRMLNLRI 431


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +1

Query: 4   HEINVFIPLAIITTKAYGFITKTKKSYYLITSEYFV*GGCLPNSYQTTESFDKLFAVIWF 183
           H  ++F    +     YG++T +K+  YL+ S   + GG L +     ++ + L  V+  
Sbjct: 249 HCKSLFDDRMVYVNHVYGYMTFSKEKTYLLASG-DIRGGILADEMGMGKTLEVLGLVLHH 307

Query: 184 MFPFSV 201
             P S+
Sbjct: 308 QLPISL 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,336
Number of Sequences: 5004
Number of extensions: 56510
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)