Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0363
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81551-2|CAB04482.4|  413|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical
           protein T05A7.11 protein.
          Length = 1200

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 115 GGCLPNSYQTTESFDKLFAVIWFMFPFSVFLSNTRSKIADQFIVISFLSTFIN 273
           G  +   Y T   F +    +WF+F   + +  T   + +QF  I FL T  N
Sbjct: 753 GVTVNKKYCTEHKFYEHLKRVWFIFGLFLNIKKTILFLENQFFGIKFLKTLCN 805


>Z81551-2|CAB04482.4|  413|Caenorhabditis elegans Hypothetical
           protein F56A12.2 protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 440 RLA*KFNFSLLNISWSKMNK*SGTSNTRSPRFKLGFPSLNKYSYSTYS 297
           + A  +  S  +IS SKM+  +  S+T S +F + FP+   Y + T S
Sbjct: 142 KFASHYGRSRKSISASKMSTAAQPSSTESAKFTISFPAEMFYEFHTRS 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,005,873
Number of Sequences: 27780
Number of extensions: 304866
Number of successful extensions: 557
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)