Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0362
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3ZEH4 Cluster: Hypothetical orf3; n=1; Epidermophyton ...    39   0.14 
UniRef50_Q54E57 Cluster: Putative uncharacterized protein; n=2; ...    34   3.9  
UniRef50_Q4N3L9 Cluster: Reticulocyte-binding protein, putative;...    34   3.9  
UniRef50_Q1HBD6 Cluster: NADH-ubiquinone oxidoreductase chain 4;...    33   8.9  

>UniRef50_Q3ZEH4 Cluster: Hypothetical orf3; n=1; Epidermophyton
           floccosum|Rep: Hypothetical orf3 - Epidermophyton
           floccosum
          Length = 188

 Score = 38.7 bits (86), Expect = 0.14
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
 Frame = -3

Query: 415 FQSTCKILISHWSLEVF*GFSLLYFFMHFLVIGTVFKLIFDNFKVLV*RQIIF*NMSDFL 236
           F S  ++  S+  L++     ++Y   + L++  +FK +F  +K L  + I   N  ++ 
Sbjct: 81  FNSVMELFYSNLGLQII----IIYLIFNLLIL-FLFKFVFYKWKFLYIKNIFGNNFYNYF 135

Query: 235 LRMYSNLHSLFTLSLYKINL*SLVRS---FYIRQYIMAN 128
           L++ +NLHS+ T+ +  I L   + S   F I  YI  N
Sbjct: 136 LKIINNLHSINTIWILFITLILFITSIINFSITLYIFNN 174


>UniRef50_Q54E57 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 989

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 24/75 (32%), Positives = 37/75 (49%)
 Frame = +3

Query: 159 LLTNDYKLILYKLNVNSECKLEYILKRKSLIF*NMICLYTSTLKLSNISLKTVPITRKCM 338
           L  NDY+  LY  N NS      I   K++IF + I  +T  L  + I  K +   R+  
Sbjct: 450 LSANDYEKSLYWFNANSTIFSNEI--SKTIIF-SFIAYHTLQLPSNKIEKKRIEEYRQFW 506

Query: 339 KKYSKENPQKTSKDQ 383
           +K  K++  +TS D+
Sbjct: 507 RKILKQSENQTSNDK 521


>UniRef50_Q4N3L9 Cluster: Reticulocyte-binding protein, putative;
           n=1; Theileria parva|Rep: Reticulocyte-binding protein,
           putative - Theileria parva
          Length = 1825

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
 Frame = +3

Query: 105 QIFTWISLFAII--Y*RI*KLLTNDYKLILYKLNVNSECKLEYILKRKSLIF*NMICLYT 278
           Q+ + IS+F+ +  +  + K + N  +LIL K+N       +YIL  KS I   +  L+ 
Sbjct: 273 QMCSMISIFSAVQLHISVQKEMINACRLILNKINSMDTIPEDYILTFKSFILVIVFMLHN 332

Query: 279 STLKLSNI-SLKTVPITRKCMKKYSKE 356
            T  L  + S  T+P+ +   KK  +E
Sbjct: 333 QTQPLEKLPSEITIPLLQSVYKKSVRE 359


>UniRef50_Q1HBD6 Cluster: NADH-ubiquinone oxidoreductase chain 4;
           n=1; Thaumamermis cosgrovei|Rep: NADH-ubiquinone
           oxidoreductase chain 4 - Thaumamermis cosgrovei
          Length = 398

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
 Frame = -3

Query: 406 TCKILISHWSLEVF*GFSLLYFFMHFLVIGTVFKLIFDN--FKVLV*RQIIF*NMSDFLL 233
           TC +L S W +  F    +   F+ +LV+  V+ L F+N  + +++   I+   ++D+L 
Sbjct: 17  TCWMLTSWWFM--FSKLLISVLFIIWLVLKMVWGLNFNNKLYTMILGLIIVLFLVTDYLW 74

Query: 232 RMY-----SNLHSLFTLSLYKINL*SLVRSFYIRQYIM 134
           + Y     S +  L  +  Y INL  L+ SFY+  Y++
Sbjct: 75  KFYMLFELSMIPMLVLILGYGINLSRLMASFYMLMYML 112


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,053,991
Number of Sequences: 1657284
Number of extensions: 9920415
Number of successful extensions: 16589
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16582
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)